Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JRC43_RS05870 Genome accession   NZ_CP070292
Coordinates   1208642..1209703 (+) Length   353 a.a.
NCBI ID   WP_208634831.1    Uniprot ID   -
Organism   Escherichia albertii strain Sample 166     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1203642..1214703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRC43_RS05845 (JRC43_05845) norR 1203791..1205305 (+) 1515 WP_025238509.1 nitric oxide reductase transcriptional regulator NorR -
  JRC43_RS05850 (JRC43_05850) gutQ 1205302..1206267 (-) 966 WP_025238510.1 arabinose-5-phosphate isomerase GutQ -
  JRC43_RS05855 (JRC43_05855) mltB 1206520..1207605 (+) 1086 WP_000476838.1 lytic murein transglycosylase B -
  JRC43_RS05860 (JRC43_05860) - 1207644..1207883 (-) 240 WP_025238511.1 hypothetical protein -
  JRC43_RS05865 (JRC43_05865) pncC 1208065..1208562 (+) 498 WP_000567258.1 nicotinamide-nucleotide amidase -
  JRC43_RS05870 (JRC43_05870) recA 1208642..1209703 (+) 1062 WP_208634831.1 recombinase RecA Machinery gene
  JRC43_RS05875 (JRC43_05875) recX 1209942..1210442 (+) 501 WP_000140493.1 recombination regulator RecX -
  JRC43_RS05880 (JRC43_05880) alaS 1210571..1213201 (+) 2631 WP_025238512.1 alanine--tRNA ligase -
  JRC43_RS05885 (JRC43_05885) csrA 1213436..1213621 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37973.44 Da        Isoelectric Point: 4.8171

>NTDB_id=539023 JRC43_RS05870 WP_208634831.1 1208642..1209703(+) (recA) [Escherichia albertii strain Sample 166]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNMLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAEANEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=539023 JRC43_RS05870 WP_208634831.1 1208642..1209703(+) (recA) [Escherichia albertii strain Sample 166]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACTGGTTCGCTTTCACTGGATATCGCACTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATTTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCTGCTGCCCAGCGCGAAGGTAAAACTTGTGCATTTATCGATGCTGAACACGCGCTGGATCCAATCTATGCTCGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGTTCCCAGCCGGACACTGGCGAACAGGCGCTGGAAATCTGTGACGCCCTGG
CGCGCTCTGGCGCAGTAGATGTTATCGTTGTTGACTCCGTAGCGGCACTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CATGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGATCTGGGTGTGAAAGAGAAGCTGATCGAGAAAGCTGGCGCGTGGTACAGCT
ACAAAGGCGAGAAGATCGGCCAGGGTAAAGCAAATGCGACTGCCTGGCTGAAAGACAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGCTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACAGCGAAGGCGTAGC
AGAAGCTAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

93.768

0.79
  recA Vibrio cholerae strain A1552

84.29

93.768

0.79
  recA Pseudomonas stutzeri DSM 10701

74.184

95.467

0.708
  recA Acinetobacter baumannii D1279779

74.085

92.918

0.688
  recA Acinetobacter baylyi ADP1

73.78

92.918

0.686
  recA Glaesserella parasuis strain SC1401

69.452

98.3

0.683
  recA Neisseria gonorrhoeae MS11

68.712

92.351

0.635
  recA Neisseria gonorrhoeae MS11

68.712

92.351

0.635
  recA Neisseria gonorrhoeae strain FA1090

68.712

92.351

0.635
  recA Ralstonia pseudosolanacearum GMI1000

70.159

89.235

0.626
  recA Streptococcus mitis SK321

60

99.15

0.595
  recA Streptococcus mitis NCTC 12261

60

99.15

0.595
  recA Helicobacter pylori strain NCTC11637

61.424

95.467

0.586
  recA Helicobacter pylori 26695

61.128

95.467

0.584
  recA Streptococcus pneumoniae R6

63.158

91.501

0.578
  recA Streptococcus pneumoniae Rx1

63.158

91.501

0.578
  recA Streptococcus pneumoniae D39

63.158

91.501

0.578
  recA Streptococcus pneumoniae TIGR4

63.158

91.501

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.661

94.334

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

91.785

0.572
  recA Streptococcus mutans UA159

61.846

92.068

0.569
  recA Streptococcus pyogenes NZ131

61.846

92.068

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

92.068

0.564
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

90.935

0.564
  recA Lactococcus lactis subsp. cremoris KW2

61.3

91.501

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.935

0.552