Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AXY_RS07345 Genome accession   NC_018704
Coordinates   1476025..1477053 (-) Length   342 a.a.
NCBI ID   WP_015010167.1    Uniprot ID   K0J363
Organism   Amphibacillus xylanus NBRC 15112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1471025..1482053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXY_RS07320 (AXY_14300) - 1471383..1471745 (-) 363 WP_015010162.1 RicAFT regulatory complex protein RicA family protein -
  AXY_RS07325 (AXY_14310) - 1471860..1472780 (-) 921 WP_015010163.1 dipeptidase -
  AXY_RS07330 (AXY_14320) - 1472867..1473127 (-) 261 WP_015010164.1 stage V sporulation protein S -
  AXY_RS07335 (AXY_14330) - 1473260..1474057 (-) 798 WP_015010165.1 TIGR00282 family metallophosphoesterase -
  AXY_RS07340 (AXY_14340) rny 1474205..1475776 (-) 1572 WP_015010166.1 ribonuclease Y -
  AXY_RS07345 (AXY_14350) recA 1476025..1477053 (-) 1029 WP_015010167.1 recombinase RecA Machinery gene
  AXY_RS07350 (AXY_14360) - 1477211..1478452 (-) 1242 WP_015010168.1 competence/damage-inducible protein A -
  AXY_RS07355 (AXY_14370) pgsA 1478452..1479030 (-) 579 WP_015010169.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AXY_RS07360 (AXY_14380) - 1479109..1479993 (-) 885 WP_015010170.1 RodZ family helix-turn-helix domain-containing protein -
  AXY_RS07365 (AXY_14390) yfmH 1480207..1481493 (-) 1287 WP_015010171.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37229.21 Da        Isoelectric Point: 4.9877

>NTDB_id=53822 AXY_RS07345 WP_015010167.1 1476025..1477053(-) (recA) [Amphibacillus xylanus NBRC 15112]
MSDRKQALDQALKSIERQFGKGSIMKLGDQAEHKIATVSSGSLALDIALGIGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQKRGGTAAFIDAEHALDPVYAKNLGVNTDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAINKSQTTAIFINQVREKIGVMFGNPETTPGGRALKFYASVRLEVRRAETIKQGNEMVGNRT
KIKVVKNKVAPPFKQAEVDIMYGEGISQEGELLDIASDLDIVQKSGAWYSYNEVRLGQGRENSKEYLREHPELIDEINRA
VRAHYNLDGETTEVMDELIPEE

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=53822 AXY_RS07345 WP_015010167.1 1476025..1477053(-) (recA) [Amphibacillus xylanus NBRC 15112]
ATGAGCGATCGTAAACAAGCCCTTGATCAGGCTTTGAAATCAATAGAAAGACAGTTTGGTAAAGGCTCAATTATGAAACT
TGGTGATCAAGCTGAACATAAAATAGCGACGGTTTCTAGTGGATCATTAGCACTTGACATTGCGTTAGGAATTGGGGGCT
ATCCTAGAGGTCGTGTAATTGAAATATATGGTCCAGAGTCATCTGGTAAAACGACAGTATCCTTACATGCGATTGCAGAG
GTACAAAAACGAGGTGGTACAGCAGCTTTTATTGATGCTGAACACGCTTTAGACCCAGTATACGCTAAGAACTTAGGCGT
TAATACAGATGAGTTGTTACTTTCTCAACCAGATACTGGTGAGCAGGCTTTAGAAATTGCTGAAGCTCTAGTTCGTAGTG
GCGCAGTAGATATTGTAGTAGTGGACTCAGTAGCTGCACTAGTACCTAAAGCAGAGATAGAAGGGGAGATGGGCGACTCA
CATATGGGGCTTCAAGCACGATTGATGTCTCAAGCCCTACGTAAACTTTCAGGTGCAATAAACAAATCACAAACGACGGC
AATTTTTATTAACCAAGTTCGTGAGAAAATTGGTGTTATGTTTGGTAATCCTGAAACAACTCCAGGGGGTCGAGCATTGA
AGTTCTACGCATCTGTTCGCTTAGAAGTACGTCGTGCAGAAACGATTAAGCAAGGTAATGAGATGGTAGGTAACAGAACA
AAAATTAAAGTTGTTAAAAATAAAGTAGCCCCGCCTTTCAAGCAAGCAGAGGTAGACATTATGTATGGAGAAGGTATATC
TCAAGAAGGAGAACTTTTAGATATTGCTTCAGATTTAGATATTGTGCAAAAGAGTGGTGCATGGTATTCATATAACGAAG
TACGTCTTGGTCAAGGTCGAGAAAATTCTAAGGAATATTTACGTGAGCATCCTGAATTGATTGATGAAATTAATCGAGCA
GTTCGAGCTCATTATAATTTAGATGGTGAAACTACAGAAGTAATGGATGAATTAATTCCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0J363

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

79.878

95.906

0.766
  recA Latilactobacillus sakei subsp. sakei 23K

71.598

98.83

0.708
  recA Streptococcus pneumoniae Rx1

70.588

99.415

0.702
  recA Streptococcus pneumoniae D39

70.588

99.415

0.702
  recA Streptococcus pneumoniae R6

70.588

99.415

0.702
  recA Streptococcus pneumoniae TIGR4

70.588

99.415

0.702
  recA Streptococcus mitis NCTC 12261

70.958

97.661

0.693
  recA Streptococcus mitis SK321

70.659

97.661

0.69
  recA Streptococcus pyogenes NZ131

71.56

95.614

0.684
  recA Streptococcus mutans UA159

69.605

96.199

0.67
  recA Lactococcus lactis subsp. cremoris KW2

68.788

96.491

0.664
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.159

95.906

0.635
  recA Vibrio cholerae strain A1552

62

100

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62

100

0.635
  recA Neisseria gonorrhoeae MS11

64.759

97.076

0.629
  recA Neisseria gonorrhoeae MS11

64.759

97.076

0.629
  recA Neisseria gonorrhoeae strain FA1090

64.759

97.076

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.337

95.322

0.623
  recA Ralstonia pseudosolanacearum GMI1000

67.732

91.52

0.62
  recA Helicobacter pylori 26695

62.059

99.415

0.617
  recA Helicobacter pylori strain NCTC11637

62.059

99.415

0.617
  recA Glaesserella parasuis strain SC1401

66.144

93.275

0.617
  recA Acinetobacter baylyi ADP1

64.706

94.444

0.611
  recA Acinetobacter baumannii D1279779

65.312

93.567

0.611
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.975

94.152

0.602
  recA Pseudomonas stutzeri DSM 10701

63.24

93.86

0.594

Multiple sequence alignment