Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SPB_RS01675 Genome accession   NZ_AEUT02000001
Coordinates   334073..335842 (+) Length   589 a.a.
NCBI ID   WP_003103430.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 329073..340842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS01660 (SPB_0339) - 329848..331725 (+) 1878 WP_003104195.1 ABC-F family ATP-binding cassette domain-containing protein -
  SPB_RS01665 (SPB_0340) - 331729..332202 (+) 474 WP_003105038.1 GNAT family N-acetyltransferase -
  SPB_RS01670 (SPB_0341) rcrP 332337..334073 (+) 1737 WP_003102488.1 ABC transporter ATP-binding protein Regulator
  SPB_RS01675 (SPB_0342) rcrQ 334073..335842 (+) 1770 WP_003103430.1 ABC transporter ATP-binding protein Regulator
  SPB_RS01680 (SPB_0343) gdhA 335973..337319 (+) 1347 WP_003102566.1 NADP-specific glutamate dehydrogenase -
  SPB_RS01685 (SPB_0344) - 337386..337796 (+) 411 WP_003104023.1 peptide deformylase -
  SPB_RS01690 (SPB_0345) - 337834..338019 (-) 186 WP_003102863.1 hypothetical protein -
  SPB_RS10955 - 338169..338348 (-) 180 Protein_339 hypothetical protein -
  SPB_RS01700 (SPB_0347) - 338742..340463 (+) 1722 WP_003105372.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66202.57 Da        Isoelectric Point: 5.7203

>NTDB_id=53787 SPB_RS01675 WP_003103430.1 334073..335842(+) (rcrQ) [Streptococcus parauberis NCFD 2020]
MTEKHVFKRIWTYLRKYKTSLISAVLLKVVSALMSSLEPFVLGLAITEISNNLIEMAKGVEGAGINKSYIAFILFLYFIR
AVFFEIGSYGSNYFMTKAVQSGIKDLRQDLSHKINKIPVSYFDKHQFGDMLGRFTSDVETVSNALQQAFLQIVNAFLTIT
FAVIMALYINAPLASILIISVPLIYFSSQFVLKKSQPYFKEQAKVLGDMNGFVQENLSGFNILKLYGREDRSEEDFHAIT
DRLQEVGFKASFLSGIMMPVLHFISDSVYMIIALLAGLQVLAGKLAIGNMQAFVQYIWQISQPIQTITQLAPVLQSSKSS
LERIFTVLDETEDLSKENVSLTVPLTGQVSFNQVDFSYNDSKSLIKDFTLDVEPGEMIAIVGPTGAGKTTLINLLMRFYD
VKSGSITVDGMDIREISRQAYRQQFGMVLQDAWLFEGTIQENLQFGNLSATEDDIIQAAETANFDHFISTLPGGYQMMMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIDHRLSTIQEADKILVLKDGQ
IIEQGSHYNLLEARGFYYDLYYSQFKTSN

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=53787 SPB_RS01675 WP_003103430.1 334073..335842(+) (rcrQ) [Streptococcus parauberis NCFD 2020]
ATGACAGAAAAACATGTATTCAAAAGAATCTGGACTTATCTTAGGAAATATAAAACATCATTAATTTCAGCTGTCCTTTT
AAAAGTCGTTAGTGCCTTAATGAGTTCTTTAGAGCCTTTTGTCCTTGGTCTTGCTATTACAGAGATATCAAATAACCTCA
TTGAGATGGCTAAAGGAGTAGAAGGGGCAGGGATTAATAAATCTTATATTGCTTTTATCCTCTTCTTATATTTTATCCGT
GCTGTCTTTTTTGAAATCGGTTCATATGGCTCTAACTATTTTATGACCAAGGCTGTACAATCAGGGATAAAAGATTTACG
TCAGGACTTAAGTCATAAAATTAATAAAATTCCAGTTTCTTATTTTGATAAGCATCAATTTGGAGATATGTTGGGACGCT
TTACATCCGACGTAGAAACTGTCTCAAATGCTTTACAACAAGCCTTTTTGCAAATTGTTAATGCCTTCTTAACGATTACT
TTTGCAGTTATTATGGCCCTTTATATTAATGCGCCTTTGGCTTCAATTTTGATTATTAGCGTTCCTTTAATCTATTTTTC
TTCTCAATTTGTCTTGAAAAAATCACAACCCTACTTTAAGGAGCAAGCTAAAGTATTAGGGGATATGAATGGTTTTGTTC
AAGAGAATTTAAGCGGATTTAATATTCTTAAATTATATGGTCGCGAGGATCGATCTGAGGAAGACTTTCATGCCATCACA
GATCGCCTTCAAGAAGTTGGGTTCAAAGCAAGTTTCTTATCTGGGATTATGATGCCCGTATTGCATTTTATCTCTGACTC
GGTCTATATGATTATAGCCCTATTAGCCGGACTCCAAGTTTTGGCAGGAAAACTAGCTATTGGAAATATGCAGGCTTTTG
TTCAGTACATCTGGCAAATTAGTCAGCCGATTCAAACAATTACCCAATTAGCTCCCGTTCTTCAAAGTTCTAAATCATCA
CTCGAACGGATTTTTACGGTTCTTGATGAAACTGAAGATCTTTCTAAGGAAAATGTCTCACTAACAGTGCCCTTGACAGG
ACAAGTATCCTTTAATCAAGTTGACTTTTCCTATAATGATTCTAAGTCACTGATTAAAGATTTTACCTTAGACGTTGAAC
CTGGTGAAATGATTGCTATCGTTGGTCCGACTGGCGCTGGTAAAACAACTTTGATAAATCTTCTTATGCGTTTCTATGAT
GTTAAGAGTGGCTCAATTACTGTAGATGGGATGGATATTAGAGAGATTTCTAGGCAAGCCTATCGTCAGCAATTCGGGAT
GGTTTTACAGGATGCTTGGTTGTTTGAAGGGACTATTCAAGAGAATCTTCAATTTGGGAATTTGTCGGCGACAGAAGATG
ATATCATTCAAGCCGCTGAGACGGCCAACTTTGATCACTTTATTAGTACCTTGCCTGGCGGTTATCAGATGATGATGAAC
CAGGAATCAAGCAATATTTCTCTGGGGCAAAAACAACTCTTAACTATTGCGCGTGCGCTGTTAGCAGATCCGAAAATACT
GATTTTGGACGAGGCTACCTCATCAGTCGATACCCGTTTAGAATTATTAATTCAAAAAGCGATGAAACGCTTGATGAAAG
GTAGAACAAGTTTTGTGATTGATCACCGTTTATCAACGATTCAAGAAGCAGATAAGATACTAGTTCTAAAAGATGGCCAA
ATTATTGAACAAGGAAGTCATTACAATCTCCTAGAGGCTCGTGGATTTTATTATGATCTCTATTATAGCCAGTTCAAAAC
ATCCAATTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-303)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.177

99.83

0.421

Multiple sequence alignment