Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | JN756_RS06720 | Genome accession | NZ_CP069594 |
| Coordinates | 1500700..1501758 (+) | Length | 352 a.a. |
| NCBI ID | WP_017844661.1 | Uniprot ID | A0A1D3JT69 |
| Organism | Pseudomonas sp. Y39-6 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1487068..1500034 | 1500700..1501758 | flank | 666 |
Gene organization within MGE regions
Location: 1487068..1501758
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JN756_RS06615 (JN756_06550) | - | 1487068..1487802 (+) | 735 | WP_026139757.1 | XRE family transcriptional regulator | - |
| JN756_RS06620 (JN756_06555) | - | 1488513..1488857 (+) | 345 | WP_017844641.1 | phage holin family protein | - |
| JN756_RS06625 (JN756_06560) | - | 1488878..1489393 (+) | 516 | WP_046484889.1 | hypothetical protein | - |
| JN756_RS06630 (JN756_06565) | - | 1489397..1490008 (+) | 612 | WP_046484891.1 | phage baseplate assembly protein V | - |
| JN756_RS06635 (JN756_06570) | - | 1490018..1490350 (+) | 333 | WP_017844644.1 | phage baseplate protein | - |
| JN756_RS06640 (JN756_06575) | - | 1490347..1491342 (+) | 996 | WP_201021944.1 | baseplate J/gp47 family protein | - |
| JN756_RS06645 (JN756_06580) | - | 1491339..1491977 (+) | 639 | WP_046384531.1 | phage tail protein I | - |
| JN756_RS06650 (JN756_06585) | - | 1491974..1492504 (+) | 531 | WP_201021945.1 | hypothetical protein | - |
| JN756_RS06655 (JN756_06590) | - | 1492598..1493215 (+) | 618 | WP_201021946.1 | hypothetical protein | - |
| JN756_RS06660 (JN756_06595) | - | 1493216..1493476 (+) | 261 | WP_236255087.1 | tail fiber assembly protein | - |
| JN756_RS06665 (JN756_06600) | - | 1493564..1493737 (+) | 174 | WP_169796396.1 | hypothetical protein | - |
| JN756_RS06670 (JN756_06605) | - | 1493740..1494906 (+) | 1167 | WP_017844650.1 | tail protein | - |
| JN756_RS06675 (JN756_06610) | - | 1494906..1495412 (+) | 507 | WP_017844651.1 | phage major tail tube protein | - |
| JN756_RS06680 (JN756_06615) | - | 1495464..1496036 (+) | 573 | WP_046384528.1 | phage tail assembly protein | - |
| JN756_RS06685 (JN756_06620) | - | 1496165..1497355 (+) | 1191 | WP_201021947.1 | hypothetical protein | - |
| JN756_RS06690 (JN756_06625) | - | 1497355..1497738 (+) | 384 | WP_108525852.1 | phage tail protein | - |
| JN756_RS06695 (JN756_06630) | - | 1497731..1497943 (+) | 213 | WP_017844656.1 | tail protein X | - |
| JN756_RS06700 (JN756_06635) | - | 1497956..1498966 (+) | 1011 | WP_079442964.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| JN756_RS06705 (JN756_06640) | - | 1498989..1499546 (+) | 558 | WP_126589718.1 | glycoside hydrolase family 19 protein | - |
| JN756_RS06710 (JN756_06645) | - | 1499534..1500034 (+) | 501 | WP_057005804.1 | lysis system i-spanin subunit Rz | - |
| JN756_RS06715 (JN756_06650) | - | 1500116..1500616 (+) | 501 | WP_017844660.1 | CinA family protein | - |
| JN756_RS06720 (JN756_06655) | recA | 1500700..1501758 (+) | 1059 | WP_017844661.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37550.15 Da Isoelectric Point: 5.5108
>NTDB_id=535852 JN756_RS06720 WP_017844661.1 1500700..1501758(+) (recA) [Pseudomonas sp. Y39-6]
MDENKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAAALEK
QIRDKLLTPAPDVKAAANRAPVDEMEEVDTDV
MDENKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAAALEK
QIRDKLLTPAPDVKAAANRAPVDEMEEVDTDV
Nucleotide
Download Length: 1059 bp
>NTDB_id=535852 JN756_RS06720 WP_017844661.1 1500700..1501758(+) (recA) [Pseudomonas sp. Y39-6]
ATGGACGAGAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACGCTGTCGGTGATTGCC
CAGGCGCAAAAGATGGGCGCGACCTGCGCGTTCGTCGACGCCGAGCACGCCCTGGACCCTGAATACGCCGGCAAGCTGGG
CGTGAATGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCAGTGGCGGCCCTGGTGCCAAAAGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAGGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCGTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTTAAGAACAAAGTGGCCCCGCCATTCCGTCAGGCTGAGTTCCAGATCCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCTAAGTTCCTGGCGGACAACCCGGATGTCGCCGCCGCGCTTGAGAAG
CAGATCCGCGACAAGCTGCTGACCCCCGCGCCGGACGTGAAAGCTGCAGCCAACCGTGCGCCGGTTGACGAAATGGAAGA
AGTCGACACTGACGTCTGA
ATGGACGAGAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACGCTGTCGGTGATTGCC
CAGGCGCAAAAGATGGGCGCGACCTGCGCGTTCGTCGACGCCGAGCACGCCCTGGACCCTGAATACGCCGGCAAGCTGGG
CGTGAATGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCAGTGGCGGCCCTGGTGCCAAAAGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAGGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCGTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTTAAGAACAAAGTGGCCCCGCCATTCCGTCAGGCTGAGTTCCAGATCCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCTAAGTTCCTGGCGGACAACCCGGATGTCGCCGCCGCGCTTGAGAAG
CAGATCCGCGACAAGCTGCTGACCCCCGCGCCGGACGTGAAAGCTGCAGCCAACCGTGCGCCGGTTGACGAAATGGAAGA
AGTCGACACTGACGTCTGA
Similar proteins
Only experimentally validated proteins are listed.