Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6J77_RS11245 Genome accession   NZ_CP069535
Coordinates   2460159..2461196 (-) Length   345 a.a.
NCBI ID   WP_204109054.1    Uniprot ID   -
Organism   Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2455159..2466196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J77_RS11230 (I6J77_11230) csrA 2456229..2456432 (-) 204 WP_056716714.1 carbon storage regulator CsrA -
  I6J77_RS11235 (I6J77_11235) alaS 2456704..2459331 (-) 2628 WP_204109052.1 alanine--tRNA ligase -
  I6J77_RS11240 (I6J77_11240) - 2459416..2459919 (-) 504 WP_204109053.1 regulatory protein RecX -
  I6J77_RS11245 (I6J77_11245) recA 2460159..2461196 (-) 1038 WP_204109054.1 recombinase RecA Machinery gene
  I6J77_RS11250 (I6J77_11250) - 2461342..2461851 (-) 510 WP_082542815.1 CinA family protein -
  I6J77_RS11255 (I6J77_11255) mutS 2461939..2464578 (+) 2640 WP_204109055.1 DNA mismatch repair protein MutS -
  I6J77_RS11260 (I6J77_11260) - 2464702..2465886 (-) 1185 WP_204109056.1 PLP-dependent aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37051.42 Da        Isoelectric Point: 5.5689

>NTDB_id=535396 I6J77_RS11245 WP_204109054.1 2460159..2461196(-) (recA) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
MDDNKRKALTSALGQIEKQFGKGAVMRMGDRVNEAIETISTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTMTLQAIA
SCQRAGGTAAFIDAEHALDPTYAEKLGVKVDDLLVSQPDTGEQALEIADMLVRSGAVDMVVVDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKSGCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKKGDEIIGSE
TRVKVVKNKVAPPFRQTEFEILYGEGTSREGEIIELGVAQNLIDKSGAWYSYNGDRIGQGKENVRQFLRDNPAIANEIDK
QLRERLLVPVGRPVAAAAEEALEEA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=535396 I6J77_RS11245 WP_204109054.1 2460159..2461196(-) (recA) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
ATGGATGACAACAAGCGCAAGGCGCTCACCTCCGCCCTCGGCCAGATCGAAAAGCAGTTCGGCAAGGGTGCCGTCATGCG
CATGGGCGATCGCGTCAACGAGGCTATCGAGACGATCTCCACCGGCTCGTTGGGGCTGGACATCGCGCTGGGCGTCGGCG
GCCTGCCGCGCGGTCGCGTGGTCGAGATCTACGGCCCGGAATCCTCCGGCAAGACCACCATGACCCTGCAGGCGATCGCC
AGCTGCCAGCGCGCCGGCGGCACCGCCGCGTTCATCGACGCCGAGCACGCGCTCGACCCGACCTACGCCGAGAAGCTGGG
CGTCAAGGTCGACGACCTGCTGGTGTCGCAGCCGGATACCGGCGAGCAGGCGCTGGAGATCGCCGACATGCTGGTGCGCT
CCGGCGCGGTCGACATGGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCGAAGGCGGAAATCGAGGGCGAGATGGGCGAC
TCCCACGTCGGCCTGCACGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACTGCCAACATCAAGAAGTCCGGTTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGCGGCAACGCGC
TGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGGTGAAGAAGGGCGACGAGATCATCGGCTCGGAA
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCACCGTTCCGCCAGACCGAGTTTGAAATCCTCTACGGCGAGGGCAC
TTCGCGCGAGGGCGAGATCATCGAGCTGGGCGTGGCGCAGAACCTGATCGACAAGTCCGGTGCCTGGTACAGCTACAACG
GCGACCGCATCGGCCAGGGCAAGGAGAACGTGCGCCAGTTCCTGCGCGACAACCCGGCGATCGCCAACGAGATCGACAAG
CAGCTGCGCGAACGCCTGCTGGTGCCGGTCGGCCGGCCGGTTGCCGCCGCCGCTGAAGAGGCGCTCGAGGAAGCGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

75.072

100

0.751
  recA Acinetobacter baylyi ADP1

74.631

98.261

0.733
  recA Ralstonia pseudosolanacearum GMI1000

72.727

98.841

0.719
  recA Acinetobacter baumannii D1279779

74.618

94.783

0.707
  recA Neisseria gonorrhoeae strain FA1090

74.074

93.913

0.696
  recA Neisseria gonorrhoeae MS11

74.074

93.913

0.696
  recA Neisseria gonorrhoeae MS11

74.074

93.913

0.696
  recA Vibrio cholerae strain A1552

72.34

95.362

0.69
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.34

95.362

0.69
  recA Glaesserella parasuis strain SC1401

67.347

99.42

0.67
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.955

95.942

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

94.783

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

65.217

93.333

0.609
  recA Helicobacter pylori strain NCTC11637

63.303

94.783

0.6
  recA Helicobacter pylori 26695

62.997

94.783

0.597
  recA Streptococcus mutans UA159

62.462

94.203

0.588
  recA Streptococcus pyogenes NZ131

61.585

95.072

0.586
  recA Streptococcus mitis NCTC 12261

58.824

98.551

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

93.043

0.577
  recA Streptococcus pneumoniae Rx1

60.736

94.493

0.574
  recA Streptococcus pneumoniae D39

60.736

94.493

0.574
  recA Streptococcus pneumoniae R6

60.736

94.493

0.574
  recA Streptococcus pneumoniae TIGR4

60.736

94.493

0.574
  recA Streptococcus mitis SK321

60.991

93.623

0.571
  recA Lactococcus lactis subsp. cremoris KW2

58.514

93.623

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.798

94.783

0.548