Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6J37_RS12425 Genome accession   NZ_CP069486
Coordinates   2456262..2457299 (-) Length   345 a.a.
NCBI ID   WP_050997830.1    Uniprot ID   -
Organism   Mammaliicoccus vitulinus strain FDAARGOS_1207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2451262..2462299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J37_RS12400 (I6J37_12400) - 2451379..2451759 (+) 381 WP_103323666.1 helix-turn-helix domain-containing protein -
  I6J37_RS12405 (I6J37_12405) - 2451899..2452966 (+) 1068 WP_413481914.1 type I restriction endonuclease -
  I6J37_RS12410 (I6J37_12410) - 2452986..2453657 (+) 672 WP_103323526.1 hypothetical protein -
  I6J37_RS12415 (I6J37_12415) - 2453697..2454278 (+) 582 WP_103323527.1 DUF5067 domain-containing protein -
  I6J37_RS12420 (I6J37_12420) rny 2454487..2456046 (-) 1560 WP_016910804.1 ribonuclease Y -
  I6J37_RS12425 (I6J37_12425) recA 2456262..2457299 (-) 1038 WP_050997830.1 recombinase RecA Machinery gene
  I6J37_RS12430 (I6J37_12430) - 2457502..2458659 (-) 1158 WP_103323528.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  I6J37_RS12435 (I6J37_12435) pgsA 2458717..2459298 (-) 582 WP_103323529.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6J37_RS12440 (I6J37_12440) - 2459363..2459758 (-) 396 WP_016910800.1 helix-turn-helix domain-containing protein -
  I6J37_RS12445 (I6J37_12445) - 2459780..2460595 (-) 816 WP_016910799.1 YmfK family protein -
  I6J37_RS12450 (I6J37_12450) ymfI 2460612..2461316 (-) 705 WP_103323530.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37542.61 Da        Isoelectric Point: 5.5879

>NTDB_id=535036 I6J37_RS12425 WP_050997830.1 2456262..2457299(-) (recA) [Mammaliicoccus vitulinus strain FDAARGOS_1207]
MEKSFGKGAVMKLGDNTSREVSAVSSGSITLDKALGVGGYPNGRIIEIYGPESSGKTTVALHAIAEVQRQGGLAAFIDAE
HALDPVYAKNLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVIIDSVAALTPKAEIEGEMGDTHVGLQARLMSQALR
KLSAAISKSNTTAVFINQIREKVGVMFGNPEITPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPFR
IAEVDIMYGEGISREGELIDLAVEFDIVDKSGAWYSYNGERMGQGKENVKTYLKENPKITEEIDGILRDKLGFNGKKKEE
AKKDDKSKKDDKADKSDKEQETLLD

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=535036 I6J37_RS12425 WP_050997830.1 2456262..2457299(-) (recA) [Mammaliicoccus vitulinus strain FDAARGOS_1207]
ATGGAAAAATCCTTTGGTAAAGGGGCAGTAATGAAGCTAGGGGATAATACAAGTAGAGAAGTATCTGCAGTTTCAAGTGG
TTCTATCACACTTGATAAAGCATTAGGTGTTGGTGGATATCCTAATGGACGTATTATAGAAATTTACGGACCAGAAAGTT
CTGGTAAAACAACTGTAGCATTACATGCTATTGCTGAAGTACAACGACAAGGGGGTTTAGCTGCTTTCATTGATGCAGAA
CACGCATTAGATCCTGTTTATGCCAAGAACTTAGGTGTAGATATTGATAACCTATACTTATCACAGCCAGACCACGGAGA
GCAAGGATTAGAAATCGCTGAAGCTTTTGTACGTAGTGGTGCTGTAGATATCGTAATCATCGACTCAGTTGCTGCATTAA
CACCTAAAGCTGAAATTGAAGGTGAAATGGGAGATACTCATGTTGGTTTACAAGCAAGATTAATGAGTCAAGCTTTACGT
AAATTATCAGCAGCTATTTCTAAATCTAATACAACTGCTGTATTTATTAACCAAATTCGTGAAAAAGTTGGCGTAATGTT
TGGTAATCCTGAAATAACACCAGGTGGACGTGCACTTAAATTCTATAGTTCTGTTCGTTTAGAAGTACGTCGTGCTGAAC
AATTGAAACAAGGACAAGAAATAGTAGGTAACCGCACTAAAATTAAAGTTGTTAAAAATAAAGTTGCACCTCCATTTAGA
ATTGCAGAAGTAGATATCATGTATGGTGAAGGTATTTCACGTGAAGGGGAATTAATCGACTTAGCCGTTGAGTTTGATAT
TGTCGATAAATCTGGTGCTTGGTATTCATACAATGGTGAGCGTATGGGTCAAGGTAAAGAAAATGTTAAAACGTATCTAA
AAGAAAATCCAAAAATTACTGAAGAAATTGATGGTATTTTAAGAGACAAATTAGGCTTCAACGGTAAAAAGAAAGAAGAA
GCTAAAAAAGACGATAAATCTAAAAAAGATGACAAAGCAGATAAGTCAGATAAAGAGCAAGAAACTTTATTAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(1-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.433

91.014

0.696
  recA Latilactobacillus sakei subsp. sakei 23K

69.688

92.754

0.646
  recA Streptococcus pneumoniae Rx1

62.857

100

0.638
  recA Streptococcus pneumoniae TIGR4

62.857

100

0.638
  recA Streptococcus pneumoniae R6

62.857

100

0.638
  recA Streptococcus pneumoniae D39

62.857

100

0.638
  recA Streptococcus mutans UA159

64.223

98.841

0.635
  recA Streptococcus mitis NCTC 12261

64.478

97.101

0.626
  recA Streptococcus mitis SK321

64.179

97.101

0.623
  recA Streptococcus pyogenes NZ131

67.405

91.594

0.617
  recA Acinetobacter baumannii D1279779

66.038

92.174

0.609
  recA Lactococcus lactis subsp. cremoris KW2

65.931

91.884

0.606
  recA Acinetobacter baylyi ADP1

66.559

90.145

0.6
  recA Glaesserella parasuis strain SC1401

60.472

98.261

0.594
  recA Neisseria gonorrhoeae strain FA1090

66.343

89.565

0.594
  recA Neisseria gonorrhoeae MS11

66.343

89.565

0.594
  recA Neisseria gonorrhoeae MS11

66.343

89.565

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.873

91.594

0.594
  recA Ralstonia pseudosolanacearum GMI1000

64.013

91.014

0.583
  recA Vibrio cholerae strain A1552

64.63

90.145

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.63

90.145

0.583
  recA Helicobacter pylori strain NCTC11637

62.857

91.304

0.574
  recA Helicobacter pylori 26695

62.54

91.304

0.571
  recA Pseudomonas stutzeri DSM 10701

63.023

90.145

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.883

91.884

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.577

90.435

0.548