Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6J50_RS01835 Genome accession   NZ_CP069440
Coordinates   437999..439051 (-) Length   350 a.a.
NCBI ID   WP_008144425.1    Uniprot ID   S0FAT7
Organism   Phocaeicola coprophilus strain FDAARGOS_1220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 432999..444051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J50_RS01830 (I6J50_01830) - 435464..437941 (+) 2478 WP_008144424.1 glycoside hydrolase N-terminal domain-containing protein -
  I6J50_RS01835 (I6J50_01835) recA 437999..439051 (-) 1053 WP_008144425.1 recombinase RecA Machinery gene
  I6J50_RS01840 (I6J50_01840) bcp 439079..439528 (-) 450 WP_008144426.1 thioredoxin-dependent thiol peroxidase -
  I6J50_RS01845 (I6J50_01845) - 439633..440826 (-) 1194 WP_008144428.1 saccharopine dehydrogenase family protein -
  I6J50_RS01850 (I6J50_01850) - 440964..441770 (+) 807 WP_008144430.1 META domain-containing protein -
  I6J50_RS01855 (I6J50_01855) - 441833..442609 (-) 777 WP_008144432.1 LytTR family DNA-binding domain-containing protein -
  I6J50_RS01860 (I6J50_01860) - 442602..443072 (-) 471 WP_246497761.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37872.14 Da        Isoelectric Point: 4.9850

>NTDB_id=534696 I6J50_RS01835 WP_008144425.1 437999..439051(-) (recA) [Phocaeicola coprophilus strain FDAARGOS_1220]
MAKKDELEFEGGVESSTPKPNNSEKLKALQAAMDKIEKSFGKGSIMKMGDDHVQEVEVIPTGSIALNAALGVGGYPKGRI
IEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQPDNGEQALEIAEQLIRSSAIDII
VIDSVAALTPKAEIEGDMGDNRVGLQARLMSQALRKLTSAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASV
RLDIRRANQLKDGEEVIGNQVRVKVVKNKVAPPFRKAEFDIMFGEGISRSGEIIDLGAELGIIKKSGSWYSYNDTKLGQG
RDAAKQCIQDNPELAEELEGLIFNALKDKE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=534696 I6J50_RS01835 WP_008144425.1 437999..439051(-) (recA) [Phocaeicola coprophilus strain FDAARGOS_1220]
ATGGCAAAAAAAGACGAACTCGAATTTGAAGGAGGAGTGGAAAGCAGCACTCCGAAACCCAATAACAGCGAAAAACTGAA
AGCACTGCAGGCTGCCATGGACAAGATAGAGAAAAGTTTCGGAAAAGGCTCTATCATGAAAATGGGAGACGATCATGTGC
AGGAAGTGGAAGTGATCCCCACCGGTTCCATTGCATTGAATGCAGCACTGGGAGTTGGCGGATATCCCAAAGGACGTATC
ATTGAAATCTATGGTCCGGAATCATCCGGTAAAACCACACTGGCCATTCATGCCATTGCGGAAGCTCAAAAAGCCGGAGG
TATCGCCGCATTCATTGATGCAGAACATGCTTTCGACCGTTTCTATGCGGCCAAACTGGGAGTAGATATCGACAATCTCT
GGATCTCACAGCCGGATAACGGAGAACAGGCTCTGGAAATCGCAGAACAGCTGATCCGTTCATCGGCTATCGACATTATC
GTGATCGACTCGGTAGCCGCACTGACTCCGAAAGCTGAAATCGAAGGCGACATGGGTGACAACAGAGTAGGTTTACAGGC
GAGACTGATGTCGCAAGCTCTTCGTAAACTGACTTCGGCCATCAGCAAAACCAATACCACCTGTATCTTCATCAATCAGT
TGCGTGAGAAAATCGGTGTCATGTTCGGCAATCCGGAAACAACCACCGGCGGTAACGCCCTGAAATTCTATGCTTCCGTA
CGTCTGGACATCCGGCGTGCCAACCAGCTGAAAGACGGAGAAGAAGTGATCGGTAACCAGGTACGCGTGAAAGTAGTAAA
GAACAAAGTTGCTCCTCCTTTCCGCAAAGCTGAATTCGACATCATGTTTGGTGAAGGTATTTCCCGCAGCGGCGAAATCA
TCGATCTGGGTGCTGAACTGGGCATCATCAAGAAGAGCGGTTCCTGGTACAGTTACAACGATACCAAACTGGGACAAGGC
CGCGATGCTGCCAAACAATGCATTCAGGACAATCCGGAACTTGCAGAAGAGTTGGAAGGACTTATTTTCAACGCTTTGAA
AGATAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(27-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S0FAT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

69.006

97.714

0.674
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.951

93.143

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

68.59

89.143

0.611
  recA Neisseria gonorrhoeae MS11

66.149

92

0.609
  recA Neisseria gonorrhoeae MS11

66.149

92

0.609
  recA Neisseria gonorrhoeae strain FA1090

66.149

92

0.609
  recA Glaesserella parasuis strain SC1401

65.015

92.286

0.6
  recA Ralstonia pseudosolanacearum GMI1000

68.421

86.857

0.594
  recA Helicobacter pylori strain NCTC11637

65.094

90.857

0.591
  recA Helicobacter pylori 26695

65.094

90.857

0.591
  recA Acinetobacter baylyi ADP1

63.385

92.857

0.589
  recA Streptococcus mitis SK321

63.077

92.857

0.586
  recA Streptococcus mitis NCTC 12261

63.077

92.857

0.586
  recA Lactococcus lactis subsp. cremoris KW2

59.184

98

0.58
  recA Streptococcus pneumoniae Rx1

63.24

91.714

0.58
  recA Streptococcus pneumoniae TIGR4

63.24

91.714

0.58
  recA Streptococcus pneumoniae R6

63.24

91.714

0.58
  recA Streptococcus pneumoniae D39

63.24

91.714

0.58
  recA Acinetobacter baumannii D1279779

64.444

90

0.58
  recA Pseudomonas stutzeri DSM 10701

63.522

90.857

0.577
  recA Vibrio cholerae strain A1552

63.81

90

0.574
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.81

90

0.574
  recA Streptococcus mutans UA159

62.5

91.429

0.571
  recA Streptococcus pyogenes NZ131

62.5

91.429

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

63.492

90

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.104

95.714

0.566