Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JO965_RS23525 Genome accession   NZ_CP069354
Coordinates   4992428..4993468 (-) Length   346 a.a.
NCBI ID   WP_203441361.1    Uniprot ID   A0A974YB58
Organism   Microvirga sp. VF16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4982496..4994257 4992428..4993468 within 0


Gene organization within MGE regions


Location: 4982496..4994257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JO965_RS23480 (JO965_23475) - 4982496..4984904 (+) 2409 WP_203441355.1 AI-2E family transporter -
  JO965_RS23485 (JO965_23480) - 4985435..4985962 (-) 528 WP_203441356.1 two pore domain potassium channel family protein -
  JO965_RS23490 (JO965_23485) - 4986337..4986516 (+) 180 WP_203441357.1 YjzC family protein -
  JO965_RS23495 (JO965_23490) - 4986770..4987801 (+) 1032 WP_203439776.1 IS110 family transposase -
  JO965_RS23500 (JO965_23495) - 4988118..4989392 (+) 1275 WP_246776662.1 IS701 family transposase -
  JO965_RS23510 - 4990463..4990816 (-) 354 WP_203441358.1 hypothetical protein -
  JO965_RS23515 (JO965_23505) - 4990854..4991861 (+) 1008 WP_203441359.1 3'-5' exonuclease -
  JO965_RS23520 (JO965_23510) - 4992036..4992308 (+) 273 WP_203441360.1 DUF2312 domain-containing protein -
  JO965_RS23525 (JO965_23515) recA 4992428..4993468 (-) 1041 WP_203441361.1 recombinase RecA Machinery gene
  JO965_RS23530 (JO965_23520) - 4993601..4994182 (+) 582 Protein_4658 UvrD-helicase domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37014.25 Da        Isoelectric Point: 4.9409

>NTDB_id=534172 JO965_RS23525 WP_203441361.1 4992428..4993468(-) (recA) [Microvirga sp. VF16]
MTTDKAKAIETAVSQIERAFGKGAIMRLGGDQVIEVETVSTGSLGLDIALGVGGLPRGRIIEVYGPESSGKTTLALQTIA
EAQKKGGVCGFIDAEHALDPVYARKLGVNLDDLLVSQPDNGEQALEIVDTLVRSGSVDILVIDSVAALTPKAEIEGEMGE
SRPGLQARLMSQALRKLTGSINRANTMVIFINQIRMKIGVTYGSPEVTTGGNALKFYASVRLDIRRTSTLKDRDEPIGNQ
VRVKVVKNKVAPPFKQVEFDIMFGEGISKMGELIDLGVKANVVEKSGAWFSYDSQRLGQGRENAKTFLKDNPEIAAEIEG
KIRQNAGLLIADLQGNDDVSASEDAA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=534172 JO965_RS23525 WP_203441361.1 4992428..4993468(-) (recA) [Microvirga sp. VF16]
ATGACTACGGATAAGGCCAAGGCGATCGAAACCGCAGTCAGCCAGATTGAACGCGCCTTTGGCAAAGGGGCCATTATGCG
CCTCGGCGGCGATCAGGTCATCGAAGTCGAGACGGTCTCCACTGGATCGCTGGGCCTCGACATCGCGCTCGGCGTTGGCG
GTCTGCCCCGCGGCCGCATTATCGAGGTCTATGGGCCGGAGTCGTCCGGTAAGACGACGCTCGCGCTACAGACCATCGCT
GAGGCTCAGAAGAAGGGCGGCGTCTGCGGCTTTATCGACGCCGAACACGCTCTGGATCCCGTCTATGCCCGCAAGCTCGG
CGTCAATCTGGACGATCTCCTAGTGTCTCAGCCGGACAATGGCGAACAGGCGCTCGAGATTGTCGACACGCTTGTCCGTT
CAGGCTCCGTGGACATTCTCGTCATCGACTCGGTTGCGGCCCTGACTCCGAAGGCTGAGATCGAAGGCGAGATGGGCGAG
AGCCGTCCCGGCCTTCAGGCCCGCCTGATGAGCCAAGCCCTGCGCAAGCTCACCGGTTCGATCAATCGCGCCAACACGAT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTCACCTATGGCAGCCCTGAGGTCACGACGGGTGGTAACGCGC
TGAAGTTCTATGCATCGGTGCGGCTCGACATCCGCCGCACGTCCACTTTGAAGGACCGCGACGAGCCGATCGGCAACCAA
GTGCGCGTGAAGGTGGTCAAGAACAAGGTTGCTCCGCCCTTCAAGCAGGTTGAGTTCGACATCATGTTCGGCGAAGGCAT
CTCCAAGATGGGCGAGTTGATCGATCTCGGCGTGAAGGCCAACGTGGTCGAGAAGTCTGGCGCTTGGTTCTCTTATGACA
GCCAGCGCCTCGGCCAGGGACGCGAGAATGCCAAGACCTTCCTGAAGGACAATCCGGAGATTGCGGCCGAGATCGAAGGC
AAGATCCGCCAGAATGCCGGCCTCCTGATTGCGGACCTGCAGGGCAACGATGACGTGAGCGCGTCAGAGGATGCAGCCTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.512

94.798

0.659
  recA Neisseria gonorrhoeae MS11

65.698

99.422

0.653
  recA Neisseria gonorrhoeae strain FA1090

65.698

99.422

0.653
  recA Neisseria gonorrhoeae MS11

65.698

99.422

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.085

95.087

0.647
  recA Pseudomonas stutzeri DSM 10701

66.667

95.376

0.636
  recA Glaesserella parasuis strain SC1401

68.652

92.197

0.633
  recA Helicobacter pylori 26695

66.769

93.931

0.627
  recA Helicobacter pylori strain NCTC11637

66.769

93.931

0.627
  recA Acinetobacter baumannii D1279779

66.975

93.642

0.627
  recA Acinetobacter baylyi ADP1

66.975

93.642

0.627
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.667

93.642

0.624
  recA Vibrio cholerae strain A1552

66.667

93.642

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

64.724

94.22

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

94.509

0.604
  recA Latilactobacillus sakei subsp. sakei 23K

60.117

98.555

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

92.486

0.564
  recA Lactococcus lactis subsp. cremoris KW2

58.182

95.376

0.555
  recA Streptococcus mitis SK321

58.006

95.665

0.555
  recA Streptococcus mitis NCTC 12261

58.006

95.665

0.555
  recA Streptococcus pyogenes NZ131

58.232

94.798

0.552
  recA Streptococcus mutans UA159

57.057

96.243

0.549
  recA Streptococcus pneumoniae R6

57.1

95.665

0.546
  recA Streptococcus pneumoniae TIGR4

57.1

95.665

0.546
  recA Streptococcus pneumoniae D39

57.1

95.665

0.546
  recA Streptococcus pneumoniae Rx1

57.1

95.665

0.546