Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JO965_RS08750 Genome accession   NZ_CP069354
Coordinates   1856214..1857308 (+) Length   364 a.a.
NCBI ID   WP_203443288.1    Uniprot ID   -
Organism   Microvirga sp. VF16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1851214..1862308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JO965_RS08735 (JO965_08730) dksA 1851324..1851743 (+) 420 WP_009489488.1 RNA polymerase-binding protein DksA -
  JO965_RS08740 (JO965_08735) - 1851865..1853121 (-) 1257 WP_246776784.1 hypothetical protein -
  JO965_RS08745 (JO965_08740) cckA 1853511..1856042 (+) 2532 WP_203443287.1 cell cycle histidine kinase CckA -
  JO965_RS08750 (JO965_08745) recA 1856214..1857308 (+) 1095 WP_203443288.1 recombinase RecA Machinery gene
  JO965_RS08755 (JO965_08750) alaS 1857723..1860374 (+) 2652 WP_203443289.1 alanine--tRNA ligase -
  JO965_RS08760 (JO965_08755) - 1860594..1861058 (-) 465 WP_203443290.1 GFA family protein -
  JO965_RS08765 (JO965_08760) - 1861168..1862133 (+) 966 WP_203443291.1 diacylglycerol kinase family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38992.55 Da        Isoelectric Point: 5.1748

>NTDB_id=534166 JO965_RS08750 WP_203443288.1 1856214..1857308(+) (recA) [Microvirga sp. VF16]
MSQSSLRLVESSSMDKDKSKALDAALSQIERAFGKGSIMRLGKGQQPVEIETVSTGSLGLDIALGVGGLPRGRIIEIYGP
ESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTGEQALEIADTLVRSGAVDVLVIDSVA
ALTPKAELDGEMGEVQPGLQARLMSQALRKLTGSISRSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRR
VSTLKDRDDPIGNQVRVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVDKSGAWFSYDSQRLGQGRENAKQ
FLRDNPEIAGKIEALIRQNAGLLADRILEQATPTADDLDEGTAD

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=534166 JO965_RS08750 WP_203443288.1 1856214..1857308(+) (recA) [Microvirga sp. VF16]
ATGTCACAGTCCTCTCTGAGACTGGTGGAAAGCTCATCAATGGATAAAGATAAATCGAAAGCTCTCGACGCGGCGCTCTC
CCAGATCGAGCGTGCCTTCGGCAAAGGCTCGATCATGCGGCTCGGCAAAGGCCAGCAGCCCGTGGAAATCGAGACCGTTT
CGACGGGTTCCCTCGGCCTCGACATCGCGCTCGGCGTCGGTGGTCTGCCCCGCGGCCGCATCATCGAGATCTACGGGCCG
GAATCTTCGGGCAAGACGACGCTCGCCCTGCACACCATCGCCGAAGCCCAGAAGAAGGGGGGCGTCTGCGCCTTCGTGGA
CGCGGAGCACGCGCTCGATCCGGTCTATGCCCGCAAGCTCGGTGTGAACCTGGACGACCTCCTGATCTCGCAGCCCGATA
CGGGCGAGCAGGCCCTTGAGATCGCCGATACGCTGGTGCGCTCCGGCGCGGTCGACGTGCTGGTCATCGACTCGGTCGCG
GCGCTCACTCCGAAGGCTGAACTCGACGGCGAGATGGGCGAGGTCCAGCCGGGCCTTCAGGCCCGCCTGATGAGCCAGGC
CCTGCGCAAGCTCACCGGTTCGATCTCGCGCTCGAACACGATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCG
TCATGTATGGCTCGCCGGAGACGACGACGGGCGGCAATGCGCTCAAGTTCTATGCCTCCGTGCGCCTCGACATCCGCCGC
GTTTCGACCCTGAAGGATCGCGACGATCCGATCGGCAATCAGGTACGCGTGAAGGTCGTCAAGAACAAGGTCGCTCCGCC
CTTCAAGCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCGTGTCCAAGGTGGGCGAGCTCATCGATCTGGGCGTCAAGG
CCGGCATCGTCGACAAGTCCGGCGCCTGGTTCTCCTATGACAGCCAGCGCCTTGGCCAGGGCCGCGAGAACGCCAAGCAA
TTCCTGCGCGACAACCCCGAGATCGCCGGCAAGATCGAGGCCCTCATCCGCCAGAATGCCGGCTTGCTCGCCGATCGCAT
CCTGGAGCAGGCGACCCCGACCGCCGACGACCTCGATGAGGGAACCGCGGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.461

91.758

0.637
  recA Pseudomonas stutzeri DSM 10701

66.667

94.78

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

69.697

90.659

0.632
  recA Glaesserella parasuis strain SC1401

66.471

93.407

0.621
  recA Neisseria gonorrhoeae MS11

68.827

89.011

0.613
  recA Neisseria gonorrhoeae strain FA1090

68.827

89.011

0.613
  recA Neisseria gonorrhoeae MS11

68.827

89.011

0.613
  recA Vibrio cholerae strain A1552

63.352

96.703

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.352

96.703

0.613
  recA Acinetobacter baylyi ADP1

68

89.286

0.607
  recA Acinetobacter baumannii D1279779

67.385

89.286

0.602
  recA Helicobacter pylori strain NCTC11637

66.061

90.659

0.599
  recA Helicobacter pylori 26695

66.061

90.659

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

66.871

89.56

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.478

92.033

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

61.159

94.78

0.58
  recA Streptococcus pneumoniae R6

56.044

100

0.56
  recA Streptococcus pneumoniae TIGR4

56.044

100

0.56
  recA Streptococcus pneumoniae Rx1

56.044

100

0.56
  recA Streptococcus pneumoniae D39

56.044

100

0.56
  recA Streptococcus mitis NCTC 12261

58.166

95.879

0.558
  recA Streptococcus mitis SK321

57.88

95.879

0.555
  recA Streptococcus mutans UA159

57.143

96.154

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.459

91.484

0.544
  recA Lactococcus lactis subsp. cremoris KW2

59.159

91.484

0.541
  recA Streptococcus pyogenes NZ131

59.091

90.659

0.536