Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JRC48_RS00840 Genome accession   NZ_CP069349
Coordinates   180933..181958 (+) Length   341 a.a.
NCBI ID   WP_235069991.1    Uniprot ID   -
Organism   Turicibacter sp. TJ11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 175933..186958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRC48_RS00820 recU 177965..178543 (-) 579 WP_235069988.1 Holliday junction resolvase RecU -
  JRC48_RS00830 - 179336..180205 (+) 870 WP_235069989.1 RodZ domain-containing protein -
  JRC48_RS00835 pgsA 180216..180797 (+) 582 WP_235069990.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JRC48_RS00840 recA 180933..181958 (+) 1026 WP_235069991.1 recombinase RecA Machinery gene
  JRC48_RS00845 rny 182207..183700 (+) 1494 WP_255703629.1 ribonuclease Y -
  JRC48_RS00850 - 183818..184609 (+) 792 WP_235069993.1 TIGR00282 family metallophosphoesterase -
  JRC48_RS00855 - 184678..184941 (+) 264 WP_006785428.1 stage V sporulation protein S -
  JRC48_RS00860 miaB 185140..186648 (+) 1509 WP_235069994.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36742.06 Da        Isoelectric Point: 4.8987

>NTDB_id=534078 JRC48_RS00840 WP_235069991.1 180933..181958(+) (recA) [Turicibacter sp. TJ11]
MSNNREAALMQALKSIEKQYGKGSVMKLGEKTDTRIEVVSSGSLALDAALGVGGYPRGRVIEIYGPESSGKTTFALHAIA
EVQKAGGTAAFIDAEHALDPAYAAKLGVDTDELLVSQPDTGEQALEIAEALVRSGAIDILVVDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLSGAINTTKTIAIFINQVREKVGVMFGNPEVTPGGRALKFYSTIRLEVRRGETIKLGTDIVGNV
AKIKVVKNKVAPPFKAVEVDVMYGEGVSKQGEILDLAVEHNIIEKSGSWYSYNGEKMGQGRENAKLFLKENPFIMEEIAD
LIRAELNISTTEHEPMMLEEE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=534078 JRC48_RS00840 WP_235069991.1 180933..181958(+) (recA) [Turicibacter sp. TJ11]
ATGAGTAACAATCGTGAAGCCGCTTTAATGCAAGCTTTAAAAAGTATTGAAAAGCAATACGGTAAAGGTTCAGTTATGAA
ACTAGGTGAAAAAACAGATACACGTATTGAAGTCGTTTCATCTGGATCATTAGCGTTAGATGCCGCACTAGGTGTAGGTG
GTTATCCACGTGGACGTGTCATCGAAATCTACGGACCAGAAAGTTCAGGGAAAACAACATTTGCCTTACACGCGATTGCC
GAAGTACAAAAAGCGGGTGGAACAGCAGCGTTTATTGATGCAGAACATGCCTTAGATCCTGCTTATGCTGCTAAACTAGG
TGTTGATACGGATGAATTGTTAGTTTCACAACCTGATACAGGTGAGCAAGCGCTTGAAATTGCTGAGGCTTTAGTTCGAA
GTGGAGCTATTGATATTTTAGTTGTCGATTCAGTTGCTGCACTTGTTCCACGTGCTGAAATTGAAGGTGAGATGGGTGAC
TCACACGTTGGGTTACAAGCCCGCTTAATGTCACAAGCGTTACGTAAATTATCAGGTGCTATTAATACAACAAAGACGAT
TGCGATCTTTATTAACCAAGTTCGTGAAAAAGTTGGGGTTATGTTTGGAAATCCTGAAGTCACACCAGGTGGACGTGCGT
TAAAATTCTATTCAACAATTCGTCTTGAAGTTCGTCGTGGAGAAACGATTAAATTAGGAACAGATATTGTAGGGAATGTG
GCGAAAATTAAAGTTGTTAAGAATAAAGTTGCCCCACCATTTAAAGCAGTTGAAGTAGATGTGATGTATGGTGAGGGTGT
TTCAAAACAAGGTGAGATTTTAGACCTTGCGGTTGAACACAATATCATTGAAAAAAGTGGATCTTGGTATTCATATAACG
GTGAGAAAATGGGACAAGGTCGCGAAAATGCGAAATTGTTCTTAAAAGAAAATCCATTTATTATGGAAGAAATTGCTGAT
TTAATTCGTGCTGAATTAAACATCTCTACAACAGAACATGAACCAATGATGTTAGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

78.505

94.135

0.739
  recA Latilactobacillus sakei subsp. sakei 23K

72.566

99.413

0.721
  recA Streptococcus pneumoniae R6

67.683

96.188

0.651
  recA Streptococcus pneumoniae TIGR4

67.683

96.188

0.651
  recA Streptococcus mitis NCTC 12261

67.683

96.188

0.651
  recA Streptococcus pneumoniae Rx1

67.683

96.188

0.651
  recA Streptococcus pneumoniae D39

67.683

96.188

0.651
  recA Streptococcus mitis SK321

67.378

96.188

0.648
  recA Streptococcus mutans UA159

66.066

97.654

0.645
  recA Streptococcus pyogenes NZ131

66.061

96.774

0.639
  recA Lactococcus lactis subsp. cremoris KW2

65.741

95.015

0.625
  recA Acinetobacter baylyi ADP1

60.92

100

0.622
  recA Ralstonia pseudosolanacearum GMI1000

62.13

99.12

0.616
  recA Acinetobacter baumannii D1279779

60.997

100

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.048

97.361

0.604
  recA Neisseria gonorrhoeae MS11

63.077

95.308

0.601
  recA Neisseria gonorrhoeae MS11

63.077

95.308

0.601
  recA Neisseria gonorrhoeae strain FA1090

63.077

95.308

0.601
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.27

95.601

0.595
  recA Glaesserella parasuis strain SC1401

62.733

94.428

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.35

95.601

0.587
  recA Vibrio cholerae strain A1552

61.35

95.601

0.587
  recA Pseudomonas stutzeri DSM 10701

58.358

100

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.486

96.481

0.584
  recA Helicobacter pylori strain NCTC11637

59.875

93.548

0.56
  recA Helicobacter pylori 26695

59.875

93.548

0.56