Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JNO50_RS08320 Genome accession   NZ_CP069161
Coordinates   1831856..1832914 (-) Length   352 a.a.
NCBI ID   WP_215796533.1    Uniprot ID   -
Organism   Paludibacterium paludis strain BCRC 80514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1826856..1837914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO50_RS08300 - 1827128..1827745 (+) 618 WP_189534457.1 response regulator transcription factor -
  JNO50_RS08305 - 1827742..1828569 (-) 828 WP_215796532.1 transporter substrate-binding domain-containing protein -
  JNO50_RS08310 alaS 1828633..1831266 (-) 2634 WP_189534453.1 alanine--tRNA ligase -
  JNO50_RS08315 recX 1831386..1831856 (-) 471 WP_189534451.1 recombination regulator RecX -
  JNO50_RS08320 recA 1831856..1832914 (-) 1059 WP_215796533.1 recombinase RecA Machinery gene
  JNO50_RS08325 hrcA 1833137..1834162 (+) 1026 WP_189534449.1 heat-inducible transcriptional repressor HrcA -
  JNO50_RS08330 mltB 1834190..1835212 (+) 1023 WP_229804709.1 lytic murein transglycosylase B -
  JNO50_RS08335 dnaX 1835268..1837103 (+) 1836 WP_189534447.1 DNA polymerase III subunit gamma/tau -
  JNO50_RS08340 - 1837107..1837445 (+) 339 WP_189534446.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38148.55 Da        Isoelectric Point: 4.8171

>NTDB_id=532550 JNO50_RS08320 WP_215796533.1 1831856..1832914(-) (recA) [Paludibacterium paludis strain BCRC 80514]
MAERSEDKSRALAAALAQIEKQFGKGSIMRMSDNQITENLQVISTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLCL
QVVAEAQKLGGTCAYIDAENALDPVYAQKLGVQVEDLLISQPDTGEQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEG
EMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRVGAIKKGDEV
VGNETRVKVVKNKVSPPFRQADFDIMYGEGISREGEIIEFGVKHGFIEKSGAWYSYNGQKIGQGKDNVREYLKSNPQVAQ
EVERKIRDEVGVTIAITEGEPDEALMDDGLPE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=532550 JNO50_RS08320 WP_215796533.1 1831856..1832914(-) (recA) [Paludibacterium paludis strain BCRC 80514]
ATGGCGGAGCGTTCCGAAGACAAGAGCCGCGCGCTGGCGGCTGCCCTTGCCCAGATCGAAAAGCAGTTCGGCAAGGGTTC
GATCATGCGCATGAGCGACAATCAGATCACCGAAAACCTGCAGGTCATTTCGACCGGCTCGCTGGGTCTTGACCTGGCGC
TCGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCGTGGAAATCTACGGACCCGAATCCTCGGGCAAAACCACACTGTGTCTG
CAGGTGGTCGCCGAAGCCCAGAAGCTGGGCGGCACCTGCGCCTACATCGACGCGGAAAACGCGCTGGACCCGGTCTATGC
GCAAAAGCTCGGCGTACAGGTCGAAGACCTGCTGATTTCCCAGCCGGACACCGGTGAGCAGGCGCTCGAGATCTGTGACA
TGCTGGTGCGCTCGAGCGGTGTGGACGTCATCGTGGTCGACTCGGTGGCCGCCCTGGTGCCGAAGGCCGAAATCGAGGGC
GAGATGGGCGACTCCCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCG
CACCAACACCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAATCCGGAAACCACCACCG
GCGGCAACGCGCTCAAATTCTACGCGTCGGTGCGCATGGACATCCGCCGCGTCGGCGCCATCAAGAAGGGCGACGAAGTG
GTCGGCAACGAAACCCGCGTGAAGGTGGTGAAGAACAAGGTCTCCCCGCCGTTCCGCCAGGCCGACTTCGATATCATGTA
CGGCGAGGGCATCTCCCGCGAGGGGGAAATCATCGAGTTCGGCGTCAAGCACGGCTTTATCGAGAAGTCCGGCGCCTGGT
ACAGCTACAACGGGCAGAAGATCGGCCAGGGCAAGGACAACGTCCGCGAATACCTGAAGAGCAACCCCCAGGTGGCACAG
GAAGTCGAGCGCAAGATCCGCGACGAAGTCGGCGTCACTATCGCCATCACCGAGGGAGAGCCCGACGAAGCGCTGATGGA
CGACGGTCTGCCCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

77.647

96.591

0.75
  recA Neisseria gonorrhoeae strain FA1090

77.647

96.591

0.75
  recA Neisseria gonorrhoeae MS11

77.647

96.591

0.75
  recA Pseudomonas stutzeri DSM 10701

74.405

95.455

0.71
  recA Ralstonia pseudosolanacearum GMI1000

79.365

89.489

0.71
  recA Glaesserella parasuis strain SC1401

72.615

92.33

0.67
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.755

91.761

0.668
  recA Vibrio cholerae strain A1552

72.755

91.761

0.668
  recA Acinetobacter baumannii D1279779

68.293

93.182

0.636
  recA Acinetobacter baylyi ADP1

68.615

92.33

0.634
  recA Latilactobacillus sakei subsp. sakei 23K

60.34

100

0.605
  recA Helicobacter pylori strain NCTC11637

62.463

96.875

0.605
  recA Helicobacter pylori 26695

62.17

96.875

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

94.034

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.242

96.307

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

63.19

92.614

0.585
  recA Streptococcus mitis NCTC 12261

57.102

100

0.571
  recA Streptococcus pyogenes NZ131

55.932

100

0.562
  recA Streptococcus mitis SK321

59.091

93.75

0.554
  recA Streptococcus pneumoniae Rx1

58.788

93.75

0.551
  recA Streptococcus pneumoniae TIGR4

58.788

93.75

0.551
  recA Streptococcus pneumoniae D39

58.788

93.75

0.551
  recA Streptococcus pneumoniae R6

58.788

93.75

0.551
  recA Lactococcus lactis subsp. cremoris KW2

58.485

93.75

0.548
  recA Streptococcus mutans UA159

58.006

94.034

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.831

94.318

0.545