Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JM656_RS04915 Genome accession   NZ_CP069159
Coordinates   1042944..1044005 (+) Length   353 a.a.
NCBI ID   WP_203360257.1    Uniprot ID   -
Organism   Citrobacter sp. R56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037944..1049005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM656_RS04895 (JM656_04895) norR 1038302..1039819 (+) 1518 WP_203360253.1 nitric oxide reductase transcriptional regulator NorR -
  JM656_RS04900 (JM656_04900) gutQ 1039816..1040781 (-) 966 WP_203360254.1 arabinose-5-phosphate isomerase GutQ -
  JM656_RS04905 (JM656_04905) mltB 1041071..1042150 (+) 1080 WP_203360255.1 lytic murein transglycosylase B -
  JM656_RS04910 (JM656_04910) pncC 1042366..1042863 (+) 498 WP_203360256.1 nicotinamide-nucleotide amidase -
  JM656_RS04915 (JM656_04915) recA 1042944..1044005 (+) 1062 WP_203360257.1 recombinase RecA Machinery gene
  JM656_RS04920 (JM656_04920) recX 1044110..1044610 (+) 501 WP_203360258.1 recombination regulator RecX -
  JM656_RS04925 (JM656_04925) alaS 1044865..1047492 (+) 2628 WP_203360259.1 alanine--tRNA ligase -
  JM656_RS04930 (JM656_04930) csrA 1047731..1047916 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37958.28 Da        Isoelectric Point: 4.8017

>NTDB_id=532525 JM656_RS04915 WP_203360257.1 1042944..1044005(+) (recA) [Citrobacter sp. R56]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPATAKEI
EKKVRELLLNNQDSTPDFSVDDGANVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=532525 JM656_RS04915 WP_203360257.1 1042944..1044005(+) (recA) [Citrobacter sp. R56]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACCGGTTCGCTTTCACTGGATATCGCGCTGGGTG
CTGGCGGTCTGCCGATGGGGCGTATCGTCGAAATTTACGGACCGGAATCTTCCGGTAAGACAACCCTGACGCTGCAGGTT
ATTGCCGCCGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCAGAACACGCACTGGACCCGGTTTATGCCCGTAA
GCTGGGCGTCGACATTGACAACCTGCTGTGTTCTCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CGCGTTCGGGCGCGGTTGACGTTATCGTGGTCGACTCCGTTGCGGCGTTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCAGGTAACCTGAAACAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTCGGTAACCCGGAAACCACCACTGGTGGTA
ATGCGCTGAAATTCTACGCTTCTGTTCGTCTGGACATCCGTCGTATTGGCGCGGTGAAAGAGGGCGACAACGTGGTCGGT
AGCGAGACCCGCGTGAAAGTCGTAAAGAACAAAATTGCAGCACCGTTTAAACAGGCTGAGTTCCAGATCCTCTACGGTGA
AGGTATCAACTTCTATGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATCGAGAAAGCTGGCGCCTGGTACAGCT
ATAACGGCGAGAAGATCGGTCAGGGCAAAGCGAATGCGACGAACTGGCTGAAAGAGAATCCGGCGACGGCGAAAGAAATC
GAGAAGAAAGTACGCGAACTGCTGCTAAACAACCAGGATTCAACGCCAGATTTCTCCGTTGATGATGGCGCAAACGTTGC
GGAAACCAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.592

93.768

0.793
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

93.768

0.793
  recA Pseudomonas stutzeri DSM 10701

74.184

95.467

0.708
  recA Acinetobacter baumannii D1279779

74.924

92.635

0.694
  recA Acinetobacter baylyi ADP1

74.618

92.635

0.691
  recA Glaesserella parasuis strain SC1401

68.876

98.3

0.677
  recA Neisseria gonorrhoeae MS11

69.325

92.351

0.64
  recA Neisseria gonorrhoeae MS11

69.325

92.351

0.64
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.351

0.64
  recA Ralstonia pseudosolanacearum GMI1000

71.383

88.102

0.629
  recA Streptococcus mitis SK321

59.714

99.15

0.592
  recA Streptococcus mitis NCTC 12261

59.714

99.15

0.592
  recA Streptococcus pneumoniae TIGR4

59.77

98.584

0.589
  recA Streptococcus pneumoniae R6

59.77

98.584

0.589
  recA Streptococcus pneumoniae D39

59.77

98.584

0.589
  recA Streptococcus pneumoniae Rx1

59.77

98.584

0.589
  recA Helicobacter pylori strain NCTC11637

61.424

95.467

0.586
  recA Helicobacter pylori 26695

61.128

95.467

0.584
  recA Lactococcus lactis subsp. cremoris KW2

63.158

91.501

0.578
  recA Streptococcus pyogenes NZ131

62.462

92.068

0.575
  recA Streptococcus mutans UA159

62.154

92.068

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.935

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.785

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.068

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

94.051

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

90.935

0.555