Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JN168_RS07820 Genome accession   NZ_CP069082
Coordinates   1664551..1665597 (-) Length   348 a.a.
NCBI ID   WP_042738825.1    Uniprot ID   A0A0D0RPY4
Organism   Staphylococcus gallinarum strain STP534     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1659551..1670597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN168_RS07805 - 1661235..1662023 (-) 789 WP_042738822.1 TIGR00282 family metallophosphoesterase -
  JN168_RS07810 - 1662185..1662400 (+) 216 WP_042738823.1 hypothetical protein -
  JN168_RS07815 rny 1662592..1664151 (-) 1560 WP_107512619.1 ribonuclease Y -
  JN168_RS07820 recA 1664551..1665597 (-) 1047 WP_042738825.1 recombinase RecA Machinery gene
  JN168_RS07825 - 1665766..1666914 (-) 1149 WP_279525744.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  JN168_RS07830 pgsA 1667103..1667681 (-) 579 WP_042738827.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JN168_RS07835 - 1667719..1668111 (-) 393 WP_042738828.1 RodZ family helix-turn-helix domain-containing protein -
  JN168_RS07840 - 1668151..1668981 (-) 831 WP_042738829.1 DUF3388 domain-containing protein -
  JN168_RS07845 - 1669179..1669883 (-) 705 WP_107527218.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37716.67 Da        Isoelectric Point: 4.9183

>NTDB_id=532248 JN168_RS07820 WP_042738825.1 1664551..1665597(-) (recA) [Staphylococcus gallinarum strain STP534]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKARKVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRIAEVDIMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLMENPAVKNEINQ
KLRETLGIFDGDVEESEEEQPTSLFEDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=532248 JN168_RS07820 WP_042738825.1 1664551..1665597(-) (recA) [Staphylococcus gallinarum strain STP534]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAGTCATTTGGTAAAGGCGCAGTAATGAA
ACTTGGTGACAATAAAGCACGTAAAGTTTCAAGTGTTTCAAGTGGCTCAGTCACATTAGATAATGCTTTAGGAGTAGGTG
GTTACCCTAAAGGTAGAATTGTAGAAATATATGGACCAGAAAGTTCTGGTAAGACTACTGTAGCATTGCATGCTATTGCT
GAAGTACAAAAAAATGGTGGTGTAGCTGCATTTATCGATGCAGAACATGCGCTAGATCCAGTGTATGCTGAAGCATTAGG
AGTAGATATCCAAAATTTATACTTATCACAACCGGACCATGGTGAACAAGGGCTAGAAATTGCAGAAGCATTCGTTCGTA
GTGGTGCAGTAGATATTGTAGTTGTCGATTCGGTAGCCGCTTTAACACCTAAAGCAGAGATAGAAGGAGAAATGGGTGAC
ACGCATGTCGGTTTACAAGCACGACTTATGTCACAAGCGTTACGTAAATTGTCAGGTGCCATTTCTAAATCAAATACGAC
GGCAATTTTCATCAACCAGATTCGTGAAAAGGTCGGCGTTATGTTTGGTAACCCTGAAACTACACCTGGTGGAAGAGCAC
TGAAATTCTATAGTTCAGTTCGTTTAGAAGTTAGACGTGCAGAACAATTGAAACAAGGTCAAGAAATTGTTGGTAATAGA
ACTAAGATTAAAGTTGTTAAGAACAAAGTAGCACCACCTTTCAGAATTGCAGAAGTTGATATTATGTATGGTAAAGGTAT
TTCTAAAGAAGGTGAATTAATCGACTTAGGCGTTGAGAACGAAATCGTCGATAAATCAGGTGCTTGGTATTCATATAATG
GAGAACGCATGGGGCAAGGTAAAGAAAATGTTAAGACTTACCTTATGGAAAATCCAGCAGTTAAGAATGAAATCAATCAA
AAGTTACGTGAAACTTTAGGTATATTTGATGGTGATGTCGAAGAGAGTGAAGAAGAACAACCAACTTCACTATTTGAAGA
TGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0RPY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.074

93.678

0.713
  recA Latilactobacillus sakei subsp. sakei 23K

68.678

100

0.687
  recA Streptococcus mutans UA159

65.116

98.851

0.644
  recA Streptococcus pneumoniae R6

64.183

100

0.644
  recA Streptococcus pneumoniae Rx1

64.183

100

0.644
  recA Streptococcus pneumoniae D39

64.183

100

0.644
  recA Streptococcus pneumoniae TIGR4

64.183

100

0.644
  recA Acinetobacter baylyi ADP1

63.977

99.713

0.638
  recA Neisseria gonorrhoeae MS11

63.873

99.425

0.635
  recA Neisseria gonorrhoeae MS11

63.873

99.425

0.635
  recA Neisseria gonorrhoeae strain FA1090

63.873

99.425

0.635
  recA Streptococcus pyogenes NZ131

66.869

94.54

0.632
  recA Acinetobacter baumannii D1279779

63.218

100

0.632
  recA Streptococcus mitis NCTC 12261

64.327

98.276

0.632
  recA Streptococcus mitis SK321

65.766

95.69

0.629
  recA Lactococcus lactis subsp. cremoris KW2

65.861

95.115

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.343

97.989

0.621
  recA Helicobacter pylori 26695

65.244

94.253

0.615
  recA Helicobacter pylori strain NCTC11637

64.939

94.253

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.417

93.678

0.603
  recA Vibrio cholerae strain A1552

64.417

93.678

0.603
  recA Ralstonia pseudosolanacearum GMI1000

66.454

89.943

0.598
  recA Pseudomonas stutzeri DSM 10701

62.577

93.678

0.586
  recA Glaesserella parasuis strain SC1401

58.166

100

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

95.115

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

91.954

0.557