Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | JL104_RS08620 | Genome accession | NZ_CP068576 |
| Coordinates | 1732204..1733250 (-) | Length | 348 a.a. |
| NCBI ID | WP_002507827.1 | Uniprot ID | A0A9X4L1K2 |
| Organism | Staphylococcus equorum strain KS1030 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1733973..1812565 | 1732204..1733250 | flank | 723 |
Gene organization within MGE regions
Location: 1732204..1812565
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JL104_RS08620 | recA | 1732204..1733250 (-) | 1047 | WP_002507827.1 | recombinase RecA | Machinery gene |
| JL104_RS08625 | - | 1733424..1734566 (-) | 1143 | WP_202808876.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| JL104_RS08630 | pgsA | 1734873..1735451 (-) | 579 | WP_002507829.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| JL104_RS08635 | - | 1735504..1735896 (-) | 393 | WP_002507830.1 | helix-turn-helix domain-containing protein | - |
| JL104_RS08640 | - | 1735930..1736760 (-) | 831 | WP_002507831.1 | YmfK family protein | - |
| JL104_RS08645 | ymfI | 1736924..1737628 (-) | 705 | WP_002507832.1 | elongation factor P 5-aminopentanone reductase | - |
| JL104_RS08650 | yfmH | 1737630..1738916 (-) | 1287 | WP_002507833.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| JL104_RS08655 | yfmF | 1738916..1740205 (-) | 1290 | WP_002507834.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| JL104_RS08660 | - | 1740216..1740929 (-) | 714 | WP_002507835.1 | GntR family transcriptional regulator | - |
| JL104_RS14950 | - | 1740932..1742377 (-) | 1446 | Protein_1684 | DNA translocase FtsK | - |
| JL104_RS14955 | - | 1742557..1743382 (-) | 826 | Protein_1685 | DNA translocase FtsK 4TM domain-containing protein | - |
| JL104_RS08670 | rnjB | 1743690..1745363 (-) | 1674 | WP_046465284.1 | ribonuclease J2 | - |
| JL104_RS08675 | pnp | 1745763..1747862 (-) | 2100 | WP_002507838.1 | polyribonucleotide nucleotidyltransferase | - |
| JL104_RS08680 | rpsO | 1748017..1748286 (-) | 270 | WP_002507839.1 | 30S ribosomal protein S15 | - |
| JL104_RS08685 | ribF | 1748391..1749362 (-) | 972 | WP_002507840.1 | riboflavin biosynthesis protein RibF | - |
| JL104_RS08690 | truB | 1749376..1750293 (-) | 918 | WP_002507841.1 | tRNA pseudouridine(55) synthase TruB | - |
| JL104_RS08695 | rbfA | 1750422..1750769 (-) | 348 | WP_031265894.1 | 30S ribosome-binding factor RbfA | - |
| JL104_RS08700 | - | 1751205..1752077 (+) | 873 | WP_002507843.1 | HTH domain-containing protein | - |
| JL104_RS08705 | - | 1752142..1753137 (-) | 996 | WP_237736277.1 | hypothetical protein | - |
| JL104_RS08710 | infB | 1753662..1755773 (-) | 2112 | WP_002507845.1 | translation initiation factor IF-2 | - |
| JL104_RS08715 | - | 1755778..1756095 (-) | 318 | WP_002507846.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| JL104_RS08720 | rnpM | 1756092..1756376 (-) | 285 | WP_002507847.1 | RNase P modulator RnpM | - |
| JL104_RS08725 | nusA | 1756394..1757569 (-) | 1176 | WP_002507848.1 | transcription termination factor NusA | - |
| JL104_RS08730 | rimP | 1757593..1758060 (-) | 468 | WP_002507849.1 | ribosome maturation factor RimP | - |
| JL104_RS08735 | - | 1758228..1762544 (-) | 4317 | WP_202808878.1 | PolC-type DNA polymerase III | - |
| JL104_RS08740 | - | 1762908..1764608 (-) | 1701 | WP_002512313.1 | proline--tRNA ligase | - |
| JL104_RS08745 | rseP | 1764628..1765914 (-) | 1287 | WP_002507852.1 | RIP metalloprotease RseP | - |
| JL104_RS08750 | - | 1766242..1767024 (-) | 783 | WP_002507853.1 | phosphatidate cytidylyltransferase | - |
| JL104_RS08755 | - | 1767042..1767806 (-) | 765 | WP_002507854.1 | isoprenyl transferase | - |
| JL104_RS08760 | frr | 1768040..1768594 (-) | 555 | WP_002507855.1 | ribosome recycling factor | - |
| JL104_RS08765 | pyrH | 1768611..1769333 (-) | 723 | WP_202808879.1 | UMP kinase | - |
| JL104_RS08770 | tsf | 1769466..1770344 (-) | 879 | WP_002507857.1 | translation elongation factor Ts | - |
| JL104_RS08775 | rpsB | 1770439..1771227 (-) | 789 | WP_002507858.1 | 30S ribosomal protein S2 | - |
| JL104_RS08780 | codY | 1771479..1772252 (-) | 774 | WP_002507859.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| JL104_RS08785 | hslU | 1772276..1773691 (-) | 1416 | WP_002507860.1 | ATP-dependent protease ATPase subunit HslU | - |
| JL104_RS08790 | hslV | 1773825..1774367 (-) | 543 | WP_002507861.1 | ATP-dependent protease subunit HslV | - |
| JL104_RS08795 | xerC | 1774371..1775261 (-) | 891 | WP_002507862.1 | tyrosine recombinase XerC | - |
| JL104_RS08800 | trmFO | 1775380..1776687 (-) | 1308 | WP_002507863.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| JL104_RS08805 | topA | 1776853..1778922 (-) | 2070 | WP_002507864.1 | type I DNA topoisomerase | - |
| JL104_RS08810 | dprA | 1779132..1780001 (-) | 870 | WP_002512311.1 | DNA-processing protein DprA | - |
| JL104_RS08815 | sucD | 1780467..1781375 (-) | 909 | WP_002507866.1 | succinate--CoA ligase subunit alpha | - |
| JL104_RS08820 | sucC | 1781396..1782562 (-) | 1167 | WP_002507867.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JL104_RS08825 | - | 1782670..1783440 (-) | 771 | WP_002512309.1 | ribonuclease HII | - |
| JL104_RS08830 | ylqF | 1783448..1784308 (-) | 861 | WP_202808880.1 | ribosome biogenesis GTPase YlqF | - |
| JL104_RS08835 | - | 1784693..1787290 (+) | 2598 | WP_002507870.1 | YfhO family protein | - |
| JL104_RS08840 | - | 1787327..1789942 (+) | 2616 | WP_197911118.1 | YfhO family protein | - |
| JL104_RS08845 | rplS | 1790359..1790709 (-) | 351 | WP_002507872.1 | 50S ribosomal protein L19 | - |
| JL104_RS08850 | trmD | 1790811..1791548 (-) | 738 | WP_002507873.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| JL104_RS08855 | rimM | 1791548..1792051 (-) | 504 | WP_002507874.1 | ribosome maturation factor RimM | - |
| JL104_RS08860 | rpsP | 1792273..1792539 (-) | 267 | WP_002507875.1 | 30S ribosomal protein S16 | - |
| JL104_RS08865 | - | 1793027..1793779 (+) | 753 | WP_002507876.1 | 3-oxoacyl-ACP reductase | - |
| JL104_RS08870 | - | 1793806..1795119 (+) | 1314 | WP_202808881.1 | LLM class flavin-dependent oxidoreductase | - |
| JL104_RS08875 | ffh | 1795654..1797021 (-) | 1368 | WP_002507878.1 | signal recognition particle protein | - |
| JL104_RS08880 | - | 1797047..1797379 (-) | 333 | WP_002507879.1 | putative DNA-binding protein | - |
| JL104_RS08885 | ftsY | 1797366..1798598 (-) | 1233 | WP_002507880.1 | signal recognition particle-docking protein FtsY | - |
| JL104_RS08890 | smc | 1798595..1802164 (-) | 3570 | WP_202808882.1 | chromosome segregation protein SMC | - |
| JL104_RS08895 | rnc | 1802320..1803030 (-) | 711 | WP_370736906.1 | ribonuclease III | - |
| JL104_RS08900 | - | 1803266..1803499 (-) | 234 | WP_002507883.1 | acyl carrier protein | - |
| JL104_RS08905 | fabG | 1803749..1804483 (-) | 735 | WP_002507884.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| JL104_RS08910 | fabD | 1804476..1805402 (-) | 927 | WP_002507885.1 | ACP S-malonyltransferase | - |
| JL104_RS08915 | plsX | 1805395..1806381 (-) | 987 | WP_002507886.1 | phosphate acyltransferase PlsX | - |
| JL104_RS08920 | fapR | 1806374..1806943 (-) | 570 | WP_002507887.1 | transcription factor FapR | - |
| JL104_RS08925 | - | 1807284..1808843 (+) | 1560 | WP_002512302.1 | M4 family metallopeptidase | - |
| JL104_RS08930 | recG | 1809371..1811416 (-) | 2046 | WP_002512301.1 | ATP-dependent DNA helicase RecG | - |
| JL104_RS08935 | sdaAA | 1811419..1812288 (-) | 870 | WP_202808883.1 | L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37775.91 Da Isoelectric Point: 5.2212
>NTDB_id=529645 JL104_RS08620 WP_002507827.1 1732204..1733250(-) (recA) [Staphylococcus equorum strain KS1030]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKAQRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKTGGIAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSKTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDMMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKLYLKENPEIKEDINR
RLREALGIIDGDVKEDESEKQTTLLEDE
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKAQRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKTGGIAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSKTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDMMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKLYLKENPEIKEDINR
RLREALGIIDGDVKEDESEKQTTLLEDE
Nucleotide
Download Length: 1047 bp
>NTDB_id=529645 JL104_RS08620 WP_002507827.1 1732204..1733250(-) (recA) [Staphylococcus equorum strain KS1030]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGCGCAGTTATGAA
ATTAGGCGATAATAAAGCCCAAAGAGTGTCTAGCGTTTCAAGTGGTTCAGTTACTTTGGATAATGCTTTAGGTGTAGGTG
GCTACCCTAAAGGAAGAATTATAGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTAGCATTACATGCTATTGCA
GAAGTACAAAAAACTGGTGGGATTGCGGCGTTTATTGATGCTGAACATGCGTTAGATCCTGTCTATGCAGAAGCTTTAGG
TGTAGATATTCAAAATCTATATTTATCTCAACCTGACCATGGGGAACAAGGATTGGAAATTGCCGAAGCATTCGTTAGAA
GTGGTGCTGTTGACATCGTAGTTGTTGACTCCGTTGCTGCGTTAACTCCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCGCGTTTAATGTCACAAGCATTGCGTAAACTTTCAGGCGCTATTTCTAAATCAAAAACAAC
AGCAGTATTTATTAACCAAATTCGCGAAAAAGTAGGCGTGATGTTCGGTAATCCTGAAGTAACACCGGGTGGACGTGCAT
TGAAATTCTATAGTTCTGTACGTTTAGAAGTACGTCGTGCTGAACAATTAAAACAAGGCCAAGATATTGTTGGTAATAGA
ACGAAAATTAAAGTTGTTAAAAATAAAGTAGCACCGCCATTCAGAGTTGCAGAAGTGGATATGATGTATGGTAAAGGTAT
CTCTAAAGAAGGAGAACTTATTGACTTAGGTGTTGAAAATGAAATTGTAGATAAATCAGGTGCTTGGTATTCATACAATG
GAGATCGTATGGGACAAGGTAAAGAAAATGTTAAATTATATCTGAAAGAAAACCCTGAAATCAAAGAAGATATTAATCGT
AGATTGCGTGAAGCTCTAGGCATTATCGATGGTGATGTTAAAGAAGACGAAAGTGAAAAACAAACTACGCTTCTTGAAGA
TGAATAG
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGCGCAGTTATGAA
ATTAGGCGATAATAAAGCCCAAAGAGTGTCTAGCGTTTCAAGTGGTTCAGTTACTTTGGATAATGCTTTAGGTGTAGGTG
GCTACCCTAAAGGAAGAATTATAGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTAGCATTACATGCTATTGCA
GAAGTACAAAAAACTGGTGGGATTGCGGCGTTTATTGATGCTGAACATGCGTTAGATCCTGTCTATGCAGAAGCTTTAGG
TGTAGATATTCAAAATCTATATTTATCTCAACCTGACCATGGGGAACAAGGATTGGAAATTGCCGAAGCATTCGTTAGAA
GTGGTGCTGTTGACATCGTAGTTGTTGACTCCGTTGCTGCGTTAACTCCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCGCGTTTAATGTCACAAGCATTGCGTAAACTTTCAGGCGCTATTTCTAAATCAAAAACAAC
AGCAGTATTTATTAACCAAATTCGCGAAAAAGTAGGCGTGATGTTCGGTAATCCTGAAGTAACACCGGGTGGACGTGCAT
TGAAATTCTATAGTTCTGTACGTTTAGAAGTACGTCGTGCTGAACAATTAAAACAAGGCCAAGATATTGTTGGTAATAGA
ACGAAAATTAAAGTTGTTAAAAATAAAGTAGCACCGCCATTCAGAGTTGCAGAAGTGGATATGATGTATGGTAAAGGTAT
CTCTAAAGAAGGAGAACTTATTGACTTAGGTGTTGAAAATGAAATTGTAGATAAATCAGGTGCTTGGTATTCATACAATG
GAGATCGTATGGGACAAGGTAAAGAAAATGTTAAATTATATCTGAAAGAAAACCCTGAAATCAAAGAAGATATTAATCGT
AGATTGCGTGAAGCTCTAGGCATTATCGATGGTGATGTTAAAGAAGACGAAAGTGAAAAACAAACTACGCTTCTTGAAGA
TGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.