Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | JMW50_RS03540 | Genome accession | NZ_CP068559 |
| Coordinates | 786858..787904 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain CD9701 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 782068..832702 | 786858..787904 | within | 0 |
Gene organization within MGE regions
Location: 782068..832702
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW50_RS03525 (JMW50_03525) | mnmH | 783676..784734 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| JMW50_RS03530 (JMW50_03530) | rimO | 784728..786062 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| JMW50_RS03535 (JMW50_03535) | pgsA | 786049..786591 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| JMW50_RS03540 (JMW50_03540) | recA | 786858..787904 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| JMW50_RS03545 (JMW50_03545) | rny | 788080..789621 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| JMW50_RS03550 (JMW50_03550) | - | 789931..792267 (+) | 2337 | WP_003419542.1 | diguanylate cyclase | - |
| JMW50_RS03555 (JMW50_03555) | - | 793073..793171 (+) | 99 | Protein_707 | transposase | - |
| JMW50_RS03560 (JMW50_03560) | tnpB | 793173..794291 (+) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| JMW50_RS03565 (JMW50_03565) | - | 794623..796404 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| JMW50_RS03570 (JMW50_03570) | lepB | 796484..797014 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| JMW50_RS03575 (JMW50_03575) | - | 797054..797878 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| JMW50_RS03580 (JMW50_03580) | - | 798135..799046 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| JMW50_RS03585 (JMW50_03585) | purB | 799185..800630 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| JMW50_RS03590 (JMW50_03590) | - | 800931..801383 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| JMW50_RS03595 (JMW50_03595) | - | 801602..802798 (-) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| JMW50_RS03600 (JMW50_03600) | galT | 803183..804133 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| JMW50_RS03605 (JMW50_03605) | - | 804254..805006 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| JMW50_RS03610 (JMW50_03610) | - | 805098..805874 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| JMW50_RS03615 (JMW50_03615) | - | 806189..808087 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| JMW50_RS03620 (JMW50_03620) | - | 808215..809336 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| JMW50_RS03625 (JMW50_03625) | - | 809535..809867 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| JMW50_RS03630 (JMW50_03630) | - | 809854..810912 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| JMW50_RS03635 (JMW50_03635) | - | 810905..811975 (+) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| JMW50_RS03640 (JMW50_03640) | - | 812077..812613 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| JMW50_RS03645 (JMW50_03645) | - | 812733..813440 (+) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| JMW50_RS03650 (JMW50_03650) | - | 813442..814161 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| JMW50_RS03655 (JMW50_03655) | - | 814163..814933 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| JMW50_RS03660 (JMW50_03660) | - | 815067..816458 (+) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| JMW50_RS03665 (JMW50_03665) | - | 816534..817355 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| JMW50_RS03670 (JMW50_03670) | - | 817606..818760 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| JMW50_RS03675 (JMW50_03675) | - | 818943..819143 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| JMW50_RS03680 (JMW50_03680) | - | 819564..819992 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| JMW50_RS03685 (JMW50_03685) | - | 820135..820890 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| JMW50_RS03690 (JMW50_03690) | - | 821591..822097 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| JMW50_RS03695 (JMW50_03695) | - | 822179..822499 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| JMW50_RS03700 (JMW50_03700) | - | 822668..822865 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| JMW50_RS03705 (JMW50_03705) | - | 822969..823409 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| JMW50_RS03710 (JMW50_03710) | - | 823658..824101 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| JMW50_RS03715 (JMW50_03715) | - | 824106..825170 (+) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| JMW50_RS03720 (JMW50_03720) | - | 825184..825612 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| JMW50_RS03725 (JMW50_03725) | - | 825726..826172 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| JMW50_RS03730 (JMW50_03730) | - | 826366..828819 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| JMW50_RS03735 (JMW50_03735) | - | 828819..829241 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| JMW50_RS03740 (JMW50_03740) | - | 829523..831052 (+) | 1530 | WP_003419653.1 | NlpC/P60 family protein | - |
| JMW50_RS03745 (JMW50_03745) | - | 831068..831394 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| JMW50_RS03750 (JMW50_03750) | - | 831394..831822 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=529367 JMW50_RS03540 WP_003419530.1 786858..787904(+) (recA) [Clostridioides difficile strain CD9701]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=529367 JMW50_RS03540 WP_003419530.1 786858..787904(+) (recA) [Clostridioides difficile strain CD9701]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.