Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JMW51_RS14175 Genome accession   NZ_CP068557
Coordinates   3112610..3113656 (-) Length   348 a.a.
NCBI ID   WP_003419530.1    Uniprot ID   A0AAX3GVV5
Organism   Clostridioides difficile strain CD4401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3107610..3118656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW51_RS14165 (JMW51_14165) - 3108247..3110583 (-) 2337 WP_003419542.1 diguanylate cyclase -
  JMW51_RS14170 (JMW51_14170) rny 3110893..3112434 (-) 1542 WP_003428216.1 ribonuclease Y -
  JMW51_RS14175 (JMW51_14175) recA 3112610..3113656 (-) 1047 WP_003419530.1 recombinase RecA Machinery gene
  JMW51_RS14180 (JMW51_14180) pgsA 3113923..3114465 (-) 543 WP_009905407.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JMW51_RS14185 (JMW51_14185) rimO 3114452..3115786 (-) 1335 WP_003419527.1 30S ribosomal protein S12 methylthiotransferase RimO -
  JMW51_RS14190 (JMW51_14190) mnmH 3115780..3116838 (-) 1059 WP_003419524.1 tRNA 2-selenouridine(34) synthase MnmH -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37387.68 Da        Isoelectric Point: 4.8236

>NTDB_id=529342 JMW51_RS14175 WP_003419530.1 3112610..3113656(-) (recA) [Clostridioides difficile strain CD4401]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=529342 JMW51_RS14175 WP_003419530.1 3112610..3113656(-) (recA) [Clostridioides difficile strain CD4401]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

66.762

100

0.67
  recA Streptococcus mitis SK321

66.185

99.425

0.658
  recA Streptococcus mitis NCTC 12261

68.085

94.54

0.644
  recA Bacillus subtilis subsp. subtilis str. 168

69.565

92.529

0.644
  recA Streptococcus pneumoniae D39

67.173

94.54

0.635
  recA Streptococcus pneumoniae Rx1

67.173

94.54

0.635
  recA Streptococcus pneumoniae R6

67.173

94.54

0.635
  recA Streptococcus pneumoniae TIGR4

67.173

94.54

0.635
  recA Lactococcus lactis subsp. cremoris KW2

65.476

96.552

0.632
  recA Streptococcus pyogenes NZ131

66.972

93.966

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.758

94.828

0.624
  recA Latilactobacillus sakei subsp. sakei 23K

64.955

95.115

0.618
  recA Neisseria gonorrhoeae MS11

66.987

89.655

0.601
  recA Neisseria gonorrhoeae MS11

66.987

89.655

0.601
  recA Neisseria gonorrhoeae strain FA1090

66.987

89.655

0.601
  recA Acinetobacter baylyi ADP1

64.087

92.816

0.595
  recA Pseudomonas stutzeri DSM 10701

63.889

93.103

0.595
  recA Helicobacter pylori 26695

61.976

95.977

0.595
  recA Helicobacter pylori strain NCTC11637

61.976

95.977

0.595
  recA Acinetobacter baumannii D1279779

63.777

92.816

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.048

95.402

0.592
  recA Vibrio cholerae strain A1552

62.048

95.402

0.592
  recA Glaesserella parasuis strain SC1401

64.174

92.241

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.272

93.103

0.589
  recA Ralstonia pseudosolanacearum GMI1000

66.558

88.506

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563