Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | JMW51_RS14175 | Genome accession | NZ_CP068557 |
| Coordinates | 3112610..3113656 (-) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain CD4401 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3071000..3138520 | 3112610..3113656 | within | 0 |
Gene organization within MGE regions
Location: 3071000..3138520
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW51_RS13980 (JMW51_13980) | - | 3071273..3071695 (-) | 423 | WP_003419651.1 | phage baseplate protein | - |
| JMW51_RS13985 (JMW51_13985) | - | 3071695..3074148 (-) | 2454 | WP_003419649.1 | hypothetical protein | - |
| JMW51_RS13990 (JMW51_13990) | - | 3074342..3074788 (-) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| JMW51_RS13995 (JMW51_13995) | - | 3074902..3075330 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| JMW51_RS14000 (JMW51_14000) | - | 3075344..3076408 (-) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| JMW51_RS14005 (JMW51_14005) | - | 3076413..3076856 (-) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| JMW51_RS14010 (JMW51_14010) | - | 3077105..3077545 (-) | 441 | WP_003419643.1 | hypothetical protein | - |
| JMW51_RS14015 (JMW51_14015) | - | 3077649..3077846 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| JMW51_RS14020 (JMW51_14020) | - | 3078015..3078335 (+) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| JMW51_RS14025 (JMW51_14025) | - | 3078417..3078923 (+) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| JMW51_RS14030 (JMW51_14030) | - | 3079624..3080379 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| JMW51_RS14035 (JMW51_14035) | - | 3080522..3080950 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| JMW51_RS14040 (JMW51_14040) | - | 3081371..3081571 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| JMW51_RS14045 (JMW51_14045) | - | 3081754..3082908 (-) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| JMW51_RS14050 (JMW51_14050) | - | 3083159..3083980 (+) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| JMW51_RS14055 (JMW51_14055) | - | 3084056..3085447 (-) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| JMW51_RS14060 (JMW51_14060) | - | 3085581..3086351 (-) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| JMW51_RS14065 (JMW51_14065) | - | 3086353..3087072 (-) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| JMW51_RS14070 (JMW51_14070) | - | 3087074..3087781 (-) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| JMW51_RS14075 (JMW51_14075) | - | 3087901..3088437 (-) | 537 | WP_003419598.1 | hypothetical protein | - |
| JMW51_RS14080 (JMW51_14080) | - | 3088539..3089609 (-) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| JMW51_RS14085 (JMW51_14085) | - | 3089602..3090660 (-) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| JMW51_RS14090 (JMW51_14090) | - | 3090647..3090979 (-) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| JMW51_RS14095 (JMW51_14095) | - | 3091178..3092299 (+) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| JMW51_RS14100 (JMW51_14100) | - | 3092427..3094325 (-) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| JMW51_RS14105 (JMW51_14105) | - | 3094640..3095416 (+) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| JMW51_RS14110 (JMW51_14110) | - | 3095508..3096260 (-) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| JMW51_RS14115 (JMW51_14115) | galT | 3096381..3097331 (-) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| JMW51_RS14120 (JMW51_14120) | - | 3097716..3098912 (+) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| JMW51_RS14125 (JMW51_14125) | - | 3099131..3099583 (-) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| JMW51_RS14130 (JMW51_14130) | purB | 3099884..3101329 (-) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| JMW51_RS14135 (JMW51_14135) | - | 3101468..3102379 (-) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| JMW51_RS14140 (JMW51_14140) | - | 3102636..3103460 (+) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| JMW51_RS14145 (JMW51_14145) | lepB | 3103500..3104030 (+) | 531 | WP_009905409.1 | signal peptidase I | - |
| JMW51_RS14150 (JMW51_14150) | - | 3104110..3105891 (-) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| JMW51_RS14155 (JMW51_14155) | tnpB | 3106223..3107341 (-) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| JMW51_RS14160 (JMW51_14160) | - | 3107343..3107441 (-) | 99 | Protein_2738 | transposase | - |
| JMW51_RS14165 (JMW51_14165) | - | 3108247..3110583 (-) | 2337 | WP_003419542.1 | diguanylate cyclase | - |
| JMW51_RS14170 (JMW51_14170) | rny | 3110893..3112434 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| JMW51_RS14175 (JMW51_14175) | recA | 3112610..3113656 (-) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| JMW51_RS14180 (JMW51_14180) | pgsA | 3113923..3114465 (-) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| JMW51_RS14185 (JMW51_14185) | rimO | 3114452..3115786 (-) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| JMW51_RS14190 (JMW51_14190) | mnmH | 3115780..3116838 (-) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| JMW51_RS14195 (JMW51_14195) | - | 3116841..3119249 (-) | 2409 | WP_003419521.1 | FtsK/SpoIIIE family DNA translocase | - |
| JMW51_RS14200 (JMW51_14200) | - | 3119372..3120106 (-) | 735 | WP_009905406.1 | ClpP family protease | - |
| JMW51_RS14205 (JMW51_14205) | dapG | 3120220..3121443 (-) | 1224 | WP_003419506.1 | aspartate kinase | - |
| JMW51_RS14210 (JMW51_14210) | - | 3121453..3121698 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| JMW51_RS14215 (JMW51_14215) | - | 3121733..3122980 (-) | 1248 | WP_003419500.1 | M16 family metallopeptidase | - |
| JMW51_RS14220 (JMW51_14220) | - | 3123138..3123881 (-) | 744 | WP_003419498.1 | polysaccharide deacetylase family protein | - |
| JMW51_RS14225 (JMW51_14225) | pnp | 3124004..3126115 (-) | 2112 | WP_003419494.1 | polyribonucleotide nucleotidyltransferase | - |
| JMW51_RS14230 (JMW51_14230) | - | 3126240..3127085 (-) | 846 | WP_003419493.1 | DegV family protein | - |
| JMW51_RS14235 (JMW51_14235) | rpsO | 3127325..3127582 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| JMW51_RS14240 (JMW51_14240) | - | 3127686..3128615 (-) | 930 | WP_003419488.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| JMW51_RS14245 (JMW51_14245) | truB | 3128745..3129650 (-) | 906 | WP_003419486.1 | tRNA pseudouridine(55) synthase TruB | - |
| JMW51_RS14250 (JMW51_14250) | - | 3129663..3130646 (-) | 984 | WP_003419484.1 | DHH family phosphoesterase | - |
| JMW51_RS14255 (JMW51_14255) | rbfA | 3130627..3131007 (-) | 381 | WP_003419483.1 | 30S ribosome-binding factor RbfA | - |
| JMW51_RS14260 (JMW51_14260) | infB | 3131050..3132990 (-) | 1941 | WP_003419480.1 | translation initiation factor IF-2 | - |
| JMW51_RS14265 (JMW51_14265) | - | 3133012..3133323 (-) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| JMW51_RS14270 (JMW51_14270) | rnpM | 3133313..3133594 (-) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| JMW51_RS14275 (JMW51_14275) | nusA | 3133601..3134755 (-) | 1155 | WP_003419468.1 | transcription termination factor NusA | - |
| JMW51_RS14280 (JMW51_14280) | rimP | 3134785..3135246 (-) | 462 | WP_003419467.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=529342 JMW51_RS14175 WP_003419530.1 3112610..3113656(-) (recA) [Clostridioides difficile strain CD4401]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=529342 JMW51_RS14175 WP_003419530.1 3112610..3113656(-) (recA) [Clostridioides difficile strain CD4401]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.