Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | JMW53_RS14800 | Genome accession | NZ_CP068555 |
| Coordinates | 3249317..3250363 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain M120 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3244527..3295161 | 3249317..3250363 | within | 0 |
Gene organization within MGE regions
Location: 3244527..3295161
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW53_RS14785 (JMW53_14785) | mnmH | 3246135..3247193 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| JMW53_RS14790 (JMW53_14790) | rimO | 3247187..3248521 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| JMW53_RS14795 (JMW53_14795) | pgsA | 3248508..3249050 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| JMW53_RS14800 (JMW53_14800) | recA | 3249317..3250363 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| JMW53_RS14805 (JMW53_14805) | rny | 3250539..3252080 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| JMW53_RS14810 (JMW53_14810) | - | 3252390..3254726 (+) | 2337 | WP_003419542.1 | diguanylate cyclase | - |
| JMW53_RS14815 (JMW53_14815) | - | 3255532..3255630 (+) | 99 | Protein_2852 | transposase | - |
| JMW53_RS14820 (JMW53_14820) | tnpB | 3255632..3256750 (+) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| JMW53_RS14825 (JMW53_14825) | - | 3257082..3258863 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| JMW53_RS14830 (JMW53_14830) | lepB | 3258943..3259473 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| JMW53_RS14835 (JMW53_14835) | - | 3259513..3260337 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| JMW53_RS14840 (JMW53_14840) | - | 3260594..3261505 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| JMW53_RS14845 (JMW53_14845) | purB | 3261644..3263089 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| JMW53_RS14850 (JMW53_14850) | - | 3263390..3263842 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| JMW53_RS14855 (JMW53_14855) | - | 3264061..3265257 (-) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| JMW53_RS14860 (JMW53_14860) | galT | 3265642..3266592 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| JMW53_RS14865 (JMW53_14865) | - | 3266713..3267465 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| JMW53_RS14870 (JMW53_14870) | - | 3267557..3268333 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| JMW53_RS14875 (JMW53_14875) | - | 3268648..3270546 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| JMW53_RS14880 (JMW53_14880) | - | 3270674..3271795 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| JMW53_RS14885 (JMW53_14885) | - | 3271994..3272326 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| JMW53_RS14890 (JMW53_14890) | - | 3272313..3273371 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| JMW53_RS14895 (JMW53_14895) | - | 3273364..3274434 (+) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| JMW53_RS14900 (JMW53_14900) | - | 3274536..3275072 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| JMW53_RS14905 (JMW53_14905) | - | 3275192..3275899 (+) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| JMW53_RS14910 (JMW53_14910) | - | 3275901..3276620 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| JMW53_RS14915 (JMW53_14915) | - | 3276622..3277392 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| JMW53_RS14920 (JMW53_14920) | - | 3277526..3278917 (+) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| JMW53_RS14925 (JMW53_14925) | - | 3278993..3279814 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| JMW53_RS14930 (JMW53_14930) | - | 3280065..3281219 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| JMW53_RS14935 (JMW53_14935) | - | 3281402..3281602 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| JMW53_RS14940 (JMW53_14940) | - | 3282023..3282451 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| JMW53_RS14945 (JMW53_14945) | - | 3282594..3283349 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| JMW53_RS14950 (JMW53_14950) | - | 3284050..3284556 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| JMW53_RS14955 (JMW53_14955) | - | 3284638..3284958 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| JMW53_RS14960 (JMW53_14960) | - | 3285127..3285324 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| JMW53_RS14965 (JMW53_14965) | - | 3285428..3285868 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| JMW53_RS14970 (JMW53_14970) | - | 3286117..3286560 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| JMW53_RS14975 (JMW53_14975) | - | 3286565..3287629 (+) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| JMW53_RS14980 (JMW53_14980) | - | 3287643..3288071 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| JMW53_RS14985 (JMW53_14985) | - | 3288185..3288631 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| JMW53_RS14990 (JMW53_14990) | - | 3288825..3291278 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| JMW53_RS14995 (JMW53_14995) | - | 3291278..3291700 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| JMW53_RS15000 (JMW53_15000) | - | 3291982..3293511 (+) | 1530 | WP_003419653.1 | NlpC/P60 family protein | - |
| JMW53_RS15005 (JMW53_15005) | - | 3293527..3293853 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| JMW53_RS15010 (JMW53_15010) | - | 3293853..3294281 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=529311 JMW53_RS14800 WP_003419530.1 3249317..3250363(+) (recA) [Clostridioides difficile strain M120]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=529311 JMW53_RS14800 WP_003419530.1 3249317..3250363(+) (recA) [Clostridioides difficile strain M120]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.