Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | JMW47_RS04990 | Genome accession | NZ_CP068552 |
| Coordinates | 1089019..1090065 (-) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain 7009825 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1039229..1107577 | 1089019..1090065 | within | 0 |
Gene organization within MGE regions
Location: 1039229..1107577
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW47_RS04765 (JMW47_04765) | - | 1042374..1043360 (-) | 987 | WP_003419664.1 | phage tail protein | - |
| JMW47_RS04770 (JMW47_04770) | - | 1043361..1044059 (-) | 699 | WP_003419661.1 | putative phage tail protein | - |
| JMW47_RS04775 (JMW47_04775) | - | 1044056..1045108 (-) | 1053 | WP_003419658.1 | baseplate J/gp47 family protein | - |
| JMW47_RS04780 (JMW47_04780) | - | 1045101..1045529 (-) | 429 | WP_202664094.1 | DUF2634 domain-containing protein | - |
| JMW47_RS04785 (JMW47_04785) | - | 1045529..1045855 (-) | 327 | WP_202664095.1 | DUF2577 family protein | - |
| JMW47_RS04790 (JMW47_04790) | - | 1045871..1047400 (-) | 1530 | WP_202664096.1 | NlpC/P60 family protein | - |
| JMW47_RS04795 (JMW47_04795) | - | 1047682..1048104 (-) | 423 | WP_003419651.1 | phage baseplate protein | - |
| JMW47_RS04800 (JMW47_04800) | - | 1048104..1050557 (-) | 2454 | WP_003419649.1 | hypothetical protein | - |
| JMW47_RS04805 (JMW47_04805) | - | 1050751..1051197 (-) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| JMW47_RS04810 (JMW47_04810) | - | 1051311..1051739 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| JMW47_RS04815 (JMW47_04815) | - | 1051753..1052817 (-) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| JMW47_RS04820 (JMW47_04820) | - | 1052822..1053265 (-) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| JMW47_RS04825 (JMW47_04825) | - | 1053514..1053954 (-) | 441 | WP_003419643.1 | hypothetical protein | - |
| JMW47_RS04830 (JMW47_04830) | - | 1054058..1054255 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| JMW47_RS04835 (JMW47_04835) | - | 1054424..1054744 (+) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| JMW47_RS04840 (JMW47_04840) | - | 1054826..1055332 (+) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| JMW47_RS04845 (JMW47_04845) | - | 1056033..1056788 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| JMW47_RS04850 (JMW47_04850) | - | 1056931..1057359 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| JMW47_RS04855 (JMW47_04855) | - | 1057780..1057980 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| JMW47_RS04860 (JMW47_04860) | - | 1058163..1059317 (-) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| JMW47_RS04865 (JMW47_04865) | - | 1059568..1060389 (+) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| JMW47_RS04870 (JMW47_04870) | - | 1060465..1061856 (-) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| JMW47_RS04875 (JMW47_04875) | - | 1061990..1062760 (-) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| JMW47_RS04880 (JMW47_04880) | - | 1062762..1063481 (-) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| JMW47_RS04885 (JMW47_04885) | - | 1063483..1064190 (-) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| JMW47_RS04890 (JMW47_04890) | - | 1064310..1064846 (-) | 537 | WP_003419598.1 | hypothetical protein | - |
| JMW47_RS04895 (JMW47_04895) | - | 1064948..1066018 (-) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| JMW47_RS04900 (JMW47_04900) | - | 1066011..1067069 (-) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| JMW47_RS04905 (JMW47_04905) | - | 1067056..1067388 (-) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| JMW47_RS04910 (JMW47_04910) | - | 1067587..1068708 (+) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| JMW47_RS04915 (JMW47_04915) | - | 1068836..1070734 (-) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| JMW47_RS04920 (JMW47_04920) | - | 1071049..1071825 (+) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| JMW47_RS04925 (JMW47_04925) | - | 1071917..1072669 (-) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| JMW47_RS04930 (JMW47_04930) | galT | 1072790..1073740 (-) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| JMW47_RS04935 (JMW47_04935) | - | 1074125..1075321 (+) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| JMW47_RS04940 (JMW47_04940) | - | 1075540..1075992 (-) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| JMW47_RS04945 (JMW47_04945) | purB | 1076293..1077738 (-) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| JMW47_RS04950 (JMW47_04950) | - | 1077877..1078788 (-) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| JMW47_RS04955 (JMW47_04955) | - | 1079045..1079869 (+) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| JMW47_RS04960 (JMW47_04960) | lepB | 1079909..1080439 (+) | 531 | WP_009905409.1 | signal peptidase I | - |
| JMW47_RS04965 (JMW47_04965) | - | 1080519..1082300 (-) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| JMW47_RS04970 (JMW47_04970) | tnpB | 1082632..1083750 (-) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| JMW47_RS04975 (JMW47_04975) | - | 1083752..1083850 (-) | 99 | Protein_1011 | transposase | - |
| JMW47_RS04980 (JMW47_04980) | - | 1084656..1086992 (-) | 2337 | WP_003419542.1 | diguanylate cyclase | - |
| JMW47_RS04985 (JMW47_04985) | rny | 1087302..1088843 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| JMW47_RS04990 (JMW47_04990) | recA | 1089019..1090065 (-) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| JMW47_RS04995 (JMW47_04995) | pgsA | 1090332..1090874 (-) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| JMW47_RS05000 (JMW47_05000) | rimO | 1090861..1092195 (-) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| JMW47_RS05005 (JMW47_05005) | mnmH | 1092189..1093247 (-) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| JMW47_RS05010 (JMW47_05010) | - | 1093250..1095658 (-) | 2409 | WP_003419521.1 | FtsK/SpoIIIE family DNA translocase | - |
| JMW47_RS05015 (JMW47_05015) | - | 1095781..1096515 (-) | 735 | WP_009905406.1 | ClpP family protease | - |
| JMW47_RS05020 (JMW47_05020) | dapG | 1096629..1097852 (-) | 1224 | WP_003419506.1 | aspartate kinase | - |
| JMW47_RS05025 (JMW47_05025) | - | 1097862..1098107 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| JMW47_RS05030 (JMW47_05030) | - | 1098142..1099389 (-) | 1248 | WP_003419500.1 | M16 family metallopeptidase | - |
| JMW47_RS05035 (JMW47_05035) | - | 1099547..1100290 (-) | 744 | WP_003419498.1 | polysaccharide deacetylase family protein | - |
| JMW47_RS05040 (JMW47_05040) | pnp | 1100413..1102524 (-) | 2112 | WP_003419494.1 | polyribonucleotide nucleotidyltransferase | - |
| JMW47_RS05045 (JMW47_05045) | - | 1102649..1103494 (-) | 846 | WP_003419493.1 | DegV family protein | - |
| JMW47_RS05050 (JMW47_05050) | rpsO | 1103734..1103991 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| JMW47_RS05055 (JMW47_05055) | - | 1104095..1105024 (-) | 930 | WP_003419488.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| JMW47_RS05060 (JMW47_05060) | truB | 1105154..1106059 (-) | 906 | WP_003419486.1 | tRNA pseudouridine(55) synthase TruB | - |
| JMW47_RS05065 (JMW47_05065) | - | 1106072..1107055 (-) | 984 | WP_003419484.1 | DHH family phosphoesterase | - |
| JMW47_RS05070 (JMW47_05070) | rbfA | 1107036..1107416 (-) | 381 | WP_003419483.1 | 30S ribosome-binding factor RbfA | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=529266 JMW47_RS04990 WP_003419530.1 1089019..1090065(-) (recA) [Clostridioides difficile strain 7009825]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=529266 JMW47_RS04990 WP_003419530.1 1089019..1090065(-) (recA) [Clostridioides difficile strain 7009825]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.