Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JK628_RS07120 Genome accession   NZ_CP068437
Coordinates   1635269..1636339 (+) Length   356 a.a.
NCBI ID   WP_202288823.1    Uniprot ID   -
Organism   Shewanella sp. KX20019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1630269..1641339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JK628_RS07105 (JK628_07105) - 1630378..1631274 (+) 897 WP_202288815.1 peptidoglycan DD-metalloendopeptidase family protein -
  JK628_RS07110 (JK628_07110) rpoS 1631351..1632319 (+) 969 WP_202288818.1 RNA polymerase sigma factor RpoS -
  JK628_RS07115 (JK628_07115) mutS 1632368..1634950 (-) 2583 WP_202288821.1 DNA mismatch repair protein MutS -
  JK628_RS07120 (JK628_07120) recA 1635269..1636339 (+) 1071 WP_202288823.1 recombinase RecA Machinery gene
  JK628_RS07125 (JK628_07125) alaS 1636821..1639448 (+) 2628 WP_202288825.1 alanine--tRNA ligase -
  JK628_RS07130 (JK628_07130) csrA 1639924..1640121 (+) 198 WP_202288827.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38104.71 Da        Isoelectric Point: 5.1765

>NTDB_id=529064 JK628_RS07120 WP_202288823.1 1635269..1636339(+) (recA) [Shewanella sp. KX20019]
MKKTDPNKEKALNAVLGQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRICEIYGPESSGKTTLTLE
VIAAAQKQGKTCAFIDAEHALDPVYAQKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGE
IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDRDEVI
GNETRVKVVKNKIAAPFKQAEFQILYGKGINSTGELVDLGVIHKLIEKSGAWYAYKGSKIGQGRANAGKYLIENPEVSDE
IETALRSMLLNKGEKIAPDAADTAGDNVDLETGEVF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=529064 JK628_RS07120 WP_202288823.1 1635269..1636339(+) (recA) [Shewanella sp. KX20019]
ATGAAGAAGACTGATCCAAATAAAGAGAAAGCGTTAAATGCCGTTTTAGGTCAAATTGAAAAGCAATTTGGTAAAGGTTC
AATTATGAAGTTGGGCGAAGATCGTTCGATGGACGTTGAAACGATCTCTACTGGCTCTCTATCTTTGGATGTGGCGTTGG
GCGCCGGTGGCCTGCCAATGGGACGTATTTGTGAAATCTACGGTCCTGAATCTTCAGGTAAAACGACACTGACTTTAGAA
GTGATTGCTGCAGCGCAAAAGCAGGGTAAGACCTGTGCATTTATTGATGCTGAGCATGCCTTGGATCCTGTTTATGCACA
AAAGCTAGGTGTTGATATTGATAACTTGCTTTGTTCACAACCTGATACTGGTGAGCAAGCGTTAGAGATTTGTGATGCAT
TGACTCGTTCTGGTGCCGTTGACGTTATTGTTGTCGATTCGGTAGCTGCGTTAACGCCAAAAGCTGAAATTGAAGGCGAA
ATTGGTGATTCTCACATGGGTCTAGCGGCACGTATGATGAGCCAGGCAATGCGTAAGCTTGCGGGTAACCTTAAGCAATC
AAACACTTTGCTTATATTCATTAACCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAATCCTGAAACCACAACGGGTG
GTAATGCACTTAAGTTTTACGCTTCTGTTCGTTTAGATATTCGTCGTATCGGTGCCATCAAGGACCGCGATGAAGTTATT
GGTAACGAAACGCGAGTTAAAGTGGTTAAGAACAAAATCGCTGCTCCGTTTAAGCAAGCTGAATTCCAAATCCTTTATGG
CAAAGGCATTAACAGCACTGGTGAGCTAGTTGACCTAGGTGTTATTCATAAGTTAATCGAAAAATCAGGTGCTTGGTATG
CATACAAGGGTAGCAAGATAGGCCAAGGCCGTGCCAATGCTGGAAAGTACTTAATTGAAAACCCAGAAGTCTCAGACGAG
ATTGAAACAGCTCTGCGTTCAATGTTGTTGAATAAAGGCGAAAAGATAGCACCTGATGCTGCTGACACCGCTGGTGATAA
TGTTGATTTAGAAACAGGCGAAGTGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.324

97.191

0.761
  recA Vibrio cholerae strain A1552

78.324

97.191

0.761
  recA Pseudomonas stutzeri DSM 10701

72.303

96.348

0.697
  recA Acinetobacter baumannii D1279779

68.391

97.753

0.669
  recA Glaesserella parasuis strain SC1401

67.33

98.876

0.666
  recA Acinetobacter baylyi ADP1

72.256

92.135

0.666
  recA Neisseria gonorrhoeae MS11

68.731

90.73

0.624
  recA Neisseria gonorrhoeae MS11

68.731

90.73

0.624
  recA Neisseria gonorrhoeae strain FA1090

68.731

90.73

0.624
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.36

0.618
  recA Streptococcus mitis NCTC 12261

60.056

100

0.604
  recA Streptococcus mitis SK321

60.694

97.191

0.59
  recA Streptococcus pneumoniae D39

61.29

95.787

0.587
  recA Streptococcus pneumoniae Rx1

61.29

95.787

0.587
  recA Streptococcus pneumoniae R6

61.29

95.787

0.587
  recA Streptococcus pneumoniae TIGR4

61.29

95.787

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.651

94.944

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.656

91.573

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

89.888

0.562
  recA Streptococcus pyogenes NZ131

60.79

92.416

0.562
  recA Streptococcus mutans UA159

60.79

92.416

0.562
  recA Helicobacter pylori strain NCTC11637

59.701

94.101

0.562
  recA Helicobacter pylori 26695

59.403

94.101

0.559
  recA Lactococcus lactis subsp. cremoris KW2

60.303

92.697

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

61.562

89.888

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.27

88.483

0.542