Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6J09_RS00475 Genome accession   NZ_CP068216
Coordinates   107847..108893 (+) Length   348 a.a.
NCBI ID   WP_017638350.1    Uniprot ID   A0A654ACU9
Organism   Staphylococcus pasteuri strain FDAARGOS_1152     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 102847..113893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J09_RS00450 (I6J09_00450) ymfI 103670..104374 (+) 705 WP_017638355.1 elongation factor P 5-aminopentanone reductase -
  I6J09_RS00455 (I6J09_00455) - 104508..105344 (+) 837 WP_017638354.1 YmfK family protein -
  I6J09_RS00460 (I6J09_00460) - 105364..105756 (+) 393 WP_208969889.1 helix-turn-helix domain-containing protein -
  I6J09_RS00465 (I6J09_00465) pgsA 105788..106363 (+) 576 WP_017638352.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6J09_RS00470 (I6J09_00470) - 106529..107674 (+) 1146 WP_017638351.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  I6J09_RS00475 (I6J09_00475) recA 107847..108893 (+) 1047 WP_017638350.1 recombinase RecA Machinery gene
  I6J09_RS00480 (I6J09_00480) rny 109154..110713 (+) 1560 WP_017638349.1 ribonuclease Y -
  I6J09_RS00485 (I6J09_00485) - 110853..111068 (-) 216 WP_017638348.1 hypothetical protein -
  I6J09_RS00490 (I6J09_00490) - 111232..112026 (+) 795 WP_017638347.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37827.75 Da        Isoelectric Point: 5.1065

>NTDB_id=528127 I6J09_RS00475 WP_017638350.1 107847..108893(+) (recA) [Staphylococcus pasteuri strain FDAARGOS_1152]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
ETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKSYLKENPQIKEEIDQ
KLRQKLGIFDGDVEEKEEEAPKSLFDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=528127 I6J09_RS00475 WP_017638350.1 107847..108893(+) (recA) [Staphylococcus pasteuri strain FDAARGOS_1152]
TTGGATAACGAACGTCAAAAAGCTCTAGATACAGTAATAAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGCCGTAGAGTTTCAAGTACATCAAGTGGTTCAGTTACGTTAGATAACGCATTAGGAGTAGGTG
GCTATCCTAAAGGAAGAATTATTGAGATATATGGTCCAGAAAGTTCTGGTAAAACAACAGTAGCATTACATGCTATTGCT
GAAACACAAAAAAATGGCGGCGTTGCAGCATTTATTGATGCTGAACATGCTTTAGATCCTGTATACGCACAAGCATTAGG
TGTGGATATTGATAATTTATATCTTTCACAACCTGACCACGGGGAACAAGGCCTTGAAATTGCAGAAGCTTTTGTTCGTA
GTGGTGCAGTAGATATCGTTGTAGTCGATTCAGTAGCTGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAC
ACACACGTTGGTTTACAAGCTAGATTGATGTCACAAGCGTTACGTAAATTATCTGGTGCTATTTCTAAATCTAACACTAC
AGCTATTTTCATTAACCAAATTCGTGAAAAAGTTGGTGTTATGTTTGGTAACCCAGAAACAACTCCTGGTGGTAGAGCGT
TAAAATTCTATAGCTCTGTTCGATTAGAAGTTCGTCGTGCTGAACAATTAAAACAAGGACAAGAAATTGTTGGTAATAGA
ACTAAGATTAAAGTAGTTAAAAATAAAGTTGCGCCACCATTTAGAGTTGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGAGAACTTATTGATCTTGGTGTTGAAAATGAAATTGTAGATAAATCTGGTGCATGGTATTCATACAATG
GAGATAGAATGGGACAAGGTAAAGAAAATGTTAAATCCTACCTTAAAGAAAACCCACAAATTAAAGAAGAAATTGACCAA
AAATTACGTCAAAAACTTGGAATTTTTGATGGCGACGTAGAAGAAAAAGAAGAAGAGGCGCCAAAGTCTTTATTTGATGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A654ACU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.074

93.678

0.713
  recA Latilactobacillus sakei subsp. sakei 23K

70.732

94.253

0.667
  recA Streptococcus pneumoniae R6

65.043

100

0.652
  recA Streptococcus pneumoniae Rx1

65.043

100

0.652
  recA Streptococcus pneumoniae D39

65.043

100

0.652
  recA Streptococcus pneumoniae TIGR4

65.043

100

0.652
  recA Streptococcus mitis SK321

64.943

100

0.649
  recA Streptococcus mutans UA159

64.286

100

0.647
  recA Streptococcus pyogenes NZ131

68.389

94.54

0.647
  recA Streptococcus mitis NCTC 12261

65.217

99.138

0.647
  recA Acinetobacter baumannii D1279779

63.506

100

0.635
  recA Neisseria gonorrhoeae strain FA1090

63.689

99.713

0.635
  recA Neisseria gonorrhoeae MS11

63.689

99.713

0.635
  recA Neisseria gonorrhoeae MS11

63.689

99.713

0.635
  recA Lactococcus lactis subsp. cremoris KW2

65.559

95.115

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.957

94.54

0.624
  recA Acinetobacter baylyi ADP1

66.258

93.678

0.621
  recA Vibrio cholerae strain A1552

65.337

93.678

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.337

93.678

0.612
  recA Helicobacter pylori 26695

64.634

94.253

0.609
  recA Helicobacter pylori strain NCTC11637

64.329

94.253

0.606
  recA Pseudomonas stutzeri DSM 10701

62.883

93.678

0.589
  recA Ralstonia pseudosolanacearum GMI1000

65.176

89.943

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

95.115

0.578
  recA Glaesserella parasuis strain SC1401

61.42

93.103

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

91.954

0.555