Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   I6I49_RS18520 Genome accession   NZ_CP068206
Coordinates   3330085..3331128 (+) Length   347 a.a.
NCBI ID   WP_005401034.1    Uniprot ID   A0A1T1JM42
Organism   Acinetobacter johnsonii strain FDAARGOS_1092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 3325085..3336128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I49_RS18490 (I6I49_18465) - 3325231..3325962 (-) 732 WP_201953940.1 histidine phosphatase family protein -
  I6I49_RS18495 (I6I49_18470) - 3326017..3326871 (-) 855 WP_201951651.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  I6I49_RS18500 (I6I49_18475) - 3327369..3327620 (-) 252 WP_201951654.1 hypothetical protein -
  I6I49_RS18505 (I6I49_18480) - 3327940..3328185 (-) 246 WP_004696593.1 hypothetical protein -
  I6I49_RS18510 (I6I49_18485) - 3328860..3329534 (+) 675 WP_201951657.1 HAD-IA family hydrolase -
  I6I49_RS18515 (I6I49_18490) - 3329527..3329970 (+) 444 WP_004696588.1 RNA-binding S4 domain-containing protein -
  I6I49_RS18520 (I6I49_18495) recA 3330085..3331128 (+) 1044 WP_005401034.1 recombinase RecA Machinery gene
  I6I49_RS18525 (I6I49_18500) - 3331234..3331839 (+) 606 WP_201951660.1 regulatory protein RecX -
  I6I49_RS18530 (I6I49_18505) - 3331950..3332477 (-) 528 WP_201951662.1 hypothetical protein -
  I6I49_RS18535 (I6I49_18510) - 3332558..3333259 (+) 702 WP_201951665.1 IS1 family transposase -
  I6I49_RS21095 - 3333274..3333972 (-) 699 WP_227557026.1 hypothetical protein -
  I6I49_RS18550 (I6I49_18525) - 3334378..3335217 (+) 840 WP_201951668.1 YbgF trimerization domain-containing protein -
  I6I49_RS18555 (I6I49_18530) lpxA 3335277..3336065 (-) 789 WP_010326982.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 37602.01 Da        Isoelectric Point: 5.0433

>NTDB_id=527993 I6I49_RS18520 WP_005401034.1 3330085..3331128(+) (recA) [Acinetobacter johnsonii strain FDAARGOS_1092]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGDKIGQGKNNVIRHLEENPQLAETIEK
IIREKLLTTANAAPVEENEEEPDFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=527993 I6I49_RS18520 WP_005401034.1 3330085..3331128(+) (recA) [Acinetobacter johnsonii strain FDAARGOS_1092]
ATGGATGATAATAAAAGCAAGGCGCTCAATGCTGCGCTAAGCCAAATTGAAAAGCAGTTTGGTAAAAACACAGTAATGCG
TCTTGGCGATAACACCGTACAAGCTGTTGAAGCGGTATCAACGGGTTCTTTGACACTTGATATTGCTCTAGGCATTGGCG
GCTTACCGAAAGGTCGTATCGTTGAGATTTATGGTCCTGAATCTTCAGGTAAAACAACCATGACTTTACAAGCGATTGCC
GAATGTCAAAAAGCAGGTGGTACATGTGCATTTATCGATGCAGAACACGCTTTAGACCCACAGTATGCGCGTAAACTTGG
CGTAGATATTGACAACCTCTTGGTTTCTCAGCCTGACCATGGTGAACAAGCACTTGAAATTGCAGACATGCTGGTTCGCT
CTGGTGCCATTGACCTCATCGTTGTCGACTCTGTTGCAGCATTGACACCACGTGCAGAAATTGAAGGTGAAATGGGCGAC
TCGCACATGGGCCTCCAAGCACGTTTAATGAGCCAAGCATTACGTAAAATTACAGGTAATGCGAAACGTTCAAACTGTAT
GGTGATTTTCATTAACCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAGCCCTGAAACCACGACTGGTGGTAATGCGT
TGAAATTCTATGCGTCTGTGCGTTTAGACATTCGTCGCGTAGGTCAGGTCAAAGAAGGCGATGAAATCGTTGGTTCTGAA
ACCAAAGTGAAAGTTGTCAAAAACAAAATGGCACCTCCATTCCGCGAAGCGCTCTTCCAAATCCTATATGGTAAAGGTGT
CAACCATTTGGGCGAACTTGTAGACTTAGCTGTTCAACAAGAAATCGTACAAAAAGCAGGTGCTTGGTATTCATACCAAG
GTGATAAAATTGGTCAAGGTAAAAACAATGTGATCCGTCACCTTGAAGAAAACCCTCAGTTGGCTGAAACCATTGAGAAA
ATCATTCGAGAAAAACTACTGACGACTGCAAACGCTGCGCCTGTAGAAGAGAATGAAGAAGAGCCAGACTTTTTAGATGC
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1T1JM42

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.691

100

0.922

  recA Acinetobacter baumannii D1279779

91.04

99.712

0.908

  recA Pseudomonas stutzeri DSM 10701

74.063

100

0.741

  recA Vibrio cholerae strain A1552

71.429

98.847

0.706

  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.429

98.847

0.706

  recA Glaesserella parasuis strain SC1401

68.314

99.135

0.677

  recA Ralstonia pseudosolanacearum GMI1000

70.732

94.524

0.669

  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637

  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637

  recA Neisseria gonorrhoeae strain FA1090

68.21

93.372

0.637

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.865

98.559

0.62

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

95.389

0.614

  recA Helicobacter pylori strain NCTC11637

62.202

96.83

0.602

  recA Helicobacter pylori 26695

61.905

96.83

0.599

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.094

94.813

0.579

  recA Streptococcus pneumoniae R6

61.656

93.948

0.579

  recA Streptococcus pneumoniae Rx1

61.656

93.948

0.579

  recA Streptococcus pneumoniae D39

61.656

93.948

0.579

  recA Streptococcus pneumoniae TIGR4

61.656

93.948

0.579

  recA Streptococcus pyogenes NZ131

61.28

94.524

0.579

  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576

  recA Streptococcus mutans UA159

61.538

93.66

0.576

  recA Streptococcus mitis SK321

61.3

93.084

0.571

  recA Streptococcus mitis NCTC 12261

61.3

93.084

0.571

  recA Latilactobacillus sakei subsp. sakei 23K

57.567

97.118

0.559

  recA Lactococcus lactis subsp. cremoris KW2

58.514

93.084

0.545