Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   I6I50_RS16525 Genome accession   NZ_CP068195
Coordinates   3392384..3393427 (+) Length   347 a.a.
NCBI ID   WP_005401034.1    Uniprot ID   A0A1T1JM42
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 3387384..3398427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS16495 (I6I50_16495) - 3387522..3388253 (-) 732 WP_004696597.1 histidine phosphatase family protein -
  I6I50_RS16500 (I6I50_16500) - 3388308..3389162 (-) 855 WP_010326979.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  I6I50_RS16505 (I6I50_16505) - 3389659..3389910 (-) 252 WP_005401037.1 hypothetical protein -
  I6I50_RS16510 (I6I50_16510) - 3390228..3390473 (-) 246 WP_004696593.1 hypothetical protein -
  I6I50_RS16515 (I6I50_16515) - 3391159..3391833 (+) 675 WP_005401036.1 HAD-IA family hydrolase -
  I6I50_RS16520 (I6I50_16520) - 3391826..3392269 (+) 444 WP_005401035.1 RNA-binding S4 domain-containing protein -
  I6I50_RS16525 (I6I50_16525) recA 3392384..3393427 (+) 1044 WP_005401034.1 recombinase RecA Machinery gene
  I6I50_RS16530 (I6I50_16530) - 3393534..3394139 (+) 606 WP_005401033.1 regulatory protein RecX -
  I6I50_RS16540 (I6I50_16540) - 3394996..3395841 (+) 846 WP_005401032.1 YbgF trimerization domain-containing protein -
  I6I50_RS16545 (I6I50_16545) lpxA 3395901..3396689 (-) 789 WP_005401031.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  I6I50_RS16550 (I6I50_16550) fabZ 3396686..3397171 (-) 486 WP_010326983.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I6I50_RS16555 (I6I50_16555) lpxD 3397179..3398246 (-) 1068 WP_004981927.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 37602.01 Da        Isoelectric Point: 5.0433

>NTDB_id=527959 I6I50_RS16525 WP_005401034.1 3392384..3393427(+) (recA) [Acinetobacter johnsonii strain FDAARGOS_1093]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGDKIGQGKNNVIRHLEENPQLAETIEK
IIREKLLTTANAAPVEENEEEPDFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=527959 I6I50_RS16525 WP_005401034.1 3392384..3393427(+) (recA) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGGATGATAATAAAAGCAAGGCGCTCAATGCTGCGCTAAGCCAAATTGAAAAGCAGTTTGGTAAAAACACAGTAATGCG
TCTTGGCGATAACACCGTACAAGCTGTTGAAGCGGTATCAACGGGTTCTTTGACACTTGATATTGCACTAGGCATTGGCG
GCTTACCGAAAGGTCGTATCGTTGAGATTTATGGTCCTGAATCTTCAGGTAAAACAACCATGACTTTACAAGCGATTGCC
GAATGTCAAAAAGCAGGTGGTACATGTGCATTTATCGATGCAGAACACGCTTTAGACCCACAGTATGCGCGTAAACTTGG
CGTAGATATTGACAATCTACTGGTTTCTCAGCCTGACCATGGTGAGCAAGCACTTGAAATTGCAGACATGCTGGTTCGCT
CTGGTGCTATTGACCTCATCGTTGTCGATTCTGTTGCAGCATTGACACCACGTGCGGAAATTGAAGGTGAAATGGGCGAC
TCGCACATGGGCCTCCAAGCACGTTTAATGAGCCAAGCATTACGTAAAATTACAGGTAATGCAAAACGCTCAAACTGTAT
GGTGATTTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAGCCCTGAAACCACGACTGGTGGTAATGCGT
TGAAATTCTATGCGTCTGTGCGTTTAGACATTCGTCGCGTAGGTCAGGTCAAAGAAGGCGATGAAATCGTTGGTTCTGAA
ACCAAAGTGAAAGTTGTCAAAAACAAAATGGCACCTCCATTCCGCGAAGCGCTCTTCCAAATCCTATATGGTAAAGGCGT
CAACCACTTGGGCGAACTTGTAGACTTAGCTGTTCAACAAGAAATCGTACAAAAAGCAGGTGCTTGGTATTCATACCAAG
GTGATAAAATTGGTCAAGGTAAAAACAATGTGATCCGTCACCTTGAAGAAAACCCTCAGTTGGCTGAAACCATTGAGAAA
ATCATTCGAGAAAAACTCCTGACGACTGCAAACGCTGCGCCTGTAGAAGAGAATGAAGAAGAGCCAGACTTTTTAGATGC
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1T1JM42

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.691

100

0.922

  recA Acinetobacter baumannii D1279779

91.04

99.712

0.908

  recA Pseudomonas stutzeri DSM 10701

74.063

100

0.741

  recA Vibrio cholerae strain A1552

71.429

98.847

0.706

  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.429

98.847

0.706

  recA Glaesserella parasuis strain SC1401

68.314

99.135

0.677

  recA Ralstonia pseudosolanacearum GMI1000

70.732

94.524

0.669

  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637

  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637

  recA Neisseria gonorrhoeae strain FA1090

68.21

93.372

0.637

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.865

98.559

0.62

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

95.389

0.614

  recA Helicobacter pylori strain NCTC11637

62.202

96.83

0.602

  recA Helicobacter pylori 26695

61.905

96.83

0.599

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.094

94.813

0.579

  recA Streptococcus pneumoniae R6

61.656

93.948

0.579

  recA Streptococcus pneumoniae Rx1

61.656

93.948

0.579

  recA Streptococcus pneumoniae D39

61.656

93.948

0.579

  recA Streptococcus pneumoniae TIGR4

61.656

93.948

0.579

  recA Streptococcus pyogenes NZ131

61.28

94.524

0.579

  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576

  recA Streptococcus mutans UA159

61.538

93.66

0.576

  recA Streptococcus mitis SK321

61.3

93.084

0.571

  recA Streptococcus mitis NCTC 12261

61.3

93.084

0.571

  recA Latilactobacillus sakei subsp. sakei 23K

57.567

97.118

0.559

  recA Lactococcus lactis subsp. cremoris KW2

58.514

93.084

0.545