Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6I52_RS09700 Genome accession   NZ_CP068180
Coordinates   2084558..2085604 (+) Length   348 a.a.
NCBI ID   WP_004988000.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain FDAARGOS_1095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2079558..2090604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I52_RS09670 (I6I52_09670) rpsT 2080254..2080523 (+) 270 WP_004987979.1 30S ribosomal protein S20 -
  I6I52_RS09675 (I6I52_09675) - 2080603..2081595 (+) 993 WP_004987984.1 acyltransferase family protein -
  I6I52_RS09680 (I6I52_09680) - 2081590..2082333 (-) 744 WP_004987994.1 histidine phosphatase family protein -
  I6I52_RS09685 (I6I52_09685) - 2082393..2083253 (-) 861 WP_004987995.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  I6I52_RS09690 (I6I52_09690) - 2083267..2083974 (+) 708 WP_004987996.1 HAD-IA family hydrolase -
  I6I52_RS09695 (I6I52_09695) - 2083958..2084398 (+) 441 WP_004987998.1 RNA-binding S4 domain-containing protein -
  I6I52_RS09700 (I6I52_09700) recA 2084558..2085604 (+) 1047 WP_004988000.1 recombinase RecA Machinery gene
  I6I52_RS09705 (I6I52_09705) - 2085656..2086141 (+) 486 WP_004988001.1 regulatory protein RecX -
  I6I52_RS09715 (I6I52_09715) - 2086625..2087509 (+) 885 WP_004988002.1 YbgF trimerization domain-containing protein -
  I6I52_RS09720 (I6I52_09720) lpxA 2087574..2088362 (-) 789 WP_004988003.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  I6I52_RS09725 (I6I52_09725) fabZ 2088359..2088844 (-) 486 WP_010588642.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I6I52_RS09730 (I6I52_09730) lpxD 2088852..2089922 (-) 1071 WP_004988005.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  I6I52_RS09735 (I6I52_09735) - 2089926..2090426 (-) 501 WP_004988007.1 OmpH family outer membrane protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37715.08 Da        Isoelectric Point: 4.9278

>NTDB_id=527856 I6I52_RS09700 WP_004988000.1 2084558..2085604(+) (recA) [Acinetobacter ursingii strain FDAARGOS_1095]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEALFQILYGKGTNQLGEVVDLAVQQEIVQKAGAWYSYLGNKIGQGKNNVIRYFEENPAIAQEIEK
QIRDQLLTSTPVANSTEVEEEEPDFLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=527856 I6I52_RS09700 WP_004988000.1 2084558..2085604(+) (recA) [Acinetobacter ursingii strain FDAARGOS_1095]
ATGGATGATAATAAAAGCAAGGCTTTAAACGCGGCCTTGAGCCAGATTGAAAAACAATTTGGTAAAAATACAGTGATGCG
CTTAGGTGACAACACGGTACAAGCAGTTGAAGCGGTGTCCACAGGCTCACTGACACTGGATATTGCACTCGGTATTGGTG
GTTTGCCAAAAGGCCGTATTGTTGAGATTTATGGCCCTGAATCATCAGGTAAAACCACAATGACCTTACAAGCCATTGCT
CAATGTCAAAAAGCGGGCGGTACGTGCGCGTTTATCGATGCTGAACATGCACTCGATCCACAATATGCACGTAAGCTTGG
CGTAGACATCGACAATCTATTGGTTTCACAGCCTGACCATGGTGAACAGGCACTTGAAATTGCGGACATGCTAGTGCGCT
CAGGGGCAATTGATCTGATTGTTGTCGACTCTGTTGCGGCACTGACTCCTCGCGCTGAAATTGAAGGCGAAATGGGCGAT
TCACACATGGGCTTACAAGCTCGTCTTATGAGTCAGGCATTGCGTAAAATCACGGGTAATGCCAAACGCTCAAACTGTAT
GGTGATCTTCATTAACCAGATTCGTATGAAGATTGGCGTCATGTTCGGTAGTCCAGAAACCACGACTGGTGGTAATGCAC
TTAAGTTCTATGCATCGGTACGTTTAGATATTCGTCGTGTTGGACAGGTCAAAGAAGGTGACGAGATTGTTGGTTCTGAA
ACCAAAGTCAAAGTTGTCAAAAACAAAATGGCGCCTCCATTTAAAGAAGCACTTTTCCAAATCCTTTATGGCAAAGGCAC
CAATCAACTGGGTGAAGTCGTGGATTTAGCGGTGCAACAGGAAATCGTGCAAAAAGCAGGTGCATGGTATTCTTATCTAG
GCAACAAAATTGGTCAGGGTAAAAATAACGTGATTCGTTATTTTGAAGAAAATCCAGCGATTGCGCAGGAAATTGAAAAA
CAGATTCGCGATCAATTACTGACCAGCACGCCAGTTGCAAATAGCACTGAAGTTGAAGAAGAAGAACCTGACTTTTTAGA
AAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.691

100

0.92
  recA Acinetobacter baumannii D1279779

91.931

99.713

0.917
  recA Pseudomonas stutzeri DSM 10701

74.128

98.851

0.733
  recA Vibrio cholerae strain A1552

73.394

93.966

0.69
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

93.966

0.69
  recA Glaesserella parasuis strain SC1401

70.336

93.966

0.661
  recA Ralstonia pseudosolanacearum GMI1000

69.605

94.54

0.658
  recA Neisseria gonorrhoeae MS11

68.21

93.103

0.635
  recA Neisseria gonorrhoeae MS11

68.21

93.103

0.635
  recA Neisseria gonorrhoeae strain FA1090

68.21

93.103

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.391

98.563

0.615
  recA Streptococcus pneumoniae D39

60.694

99.425

0.603
  recA Streptococcus pneumoniae TIGR4

60.694

99.425

0.603
  recA Streptococcus pneumoniae Rx1

60.694

99.425

0.603
  recA Streptococcus pneumoniae R6

60.694

99.425

0.603
  recA Streptococcus mitis NCTC 12261

60.116

99.425

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

95.115

0.598
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.236

95.115

0.592
  recA Helicobacter pylori strain NCTC11637

62.385

93.966

0.586
  recA Helicobacter pylori 26695

62.08

93.966

0.583
  recA Streptococcus mutans UA159

61.774

93.966

0.58
  recA Streptococcus mitis SK321

61.963

93.678

0.58
  recA Streptococcus pyogenes NZ131

61.538

93.391

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.529

0.569
  recA Lactococcus lactis subsp. cremoris KW2

57.91

96.264

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

55.942

99.138

0.555