Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6I54_RS13775 Genome accession   NZ_CP068174
Coordinates   3391048..3392082 (+) Length   344 a.a.
NCBI ID   WP_005677581.1    Uniprot ID   -
Organism   Bacteroides caccae strain FDAARGOS_1097     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3386048..3397082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I54_RS13755 (I6I54_13755) - 3387036..3387827 (-) 792 WP_005677584.1 META domain-containing protein -
  I6I54_RS13760 (I6I54_13760) - 3387971..3389254 (+) 1284 WP_032855186.1 hypothetical protein -
  I6I54_RS13765 (I6I54_13765) - 3389351..3390544 (+) 1194 WP_005677582.1 saccharopine dehydrogenase family protein -
  I6I54_RS13770 (I6I54_13770) bcp 3390574..3391029 (+) 456 WP_004312515.1 thioredoxin-dependent thiol peroxidase -
  I6I54_RS13775 (I6I54_13775) recA 3391048..3392082 (+) 1035 WP_005677581.1 recombinase RecA Machinery gene
  I6I54_RS13780 (I6I54_13780) - 3392204..3395662 (-) 3459 WP_005677580.1 C1 family peptidase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37072.48 Da        Isoelectric Point: 5.1911

>NTDB_id=527797 I6I54_RS13775 WP_005677581.1 3391048..3392082(+) (recA) [Bacteroides caccae strain FDAARGOS_1097]
MAKKDELNFETDNKMASSEKLKALQAAMEKIEKSFGKGSIMKMGDDSVEQVEVIPTGSIALNVALGVGGYPRGRIIEIYG
PESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVNIDDLYISQPDNGEQALEIAEQLIRSSAIDIIVIDSV
AALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIR
GSQAIKDGEEVLGKLTKVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGRDAAK
QCIADNPELAEELEGLIFEALKKV

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=527797 I6I54_RS13775 WP_005677581.1 3391048..3392082(+) (recA) [Bacteroides caccae strain FDAARGOS_1097]
ATGGCAAAGAAAGACGAACTTAATTTTGAAACAGATAATAAAATGGCATCAAGCGAAAAACTAAAAGCCTTACAGGCTGC
CATGGAAAAGATAGAAAAGAGCTTCGGTAAAGGTTCTATCATGAAAATGGGTGACGACAGTGTTGAACAAGTGGAAGTGA
TCCCGACAGGCTCTATCGCCTTGAACGTGGCACTAGGTGTAGGAGGTTACCCCAGAGGTAGAATCATCGAAATCTATGGC
CCGGAATCTTCCGGTAAAACAACATTGGCTATCCACGCCATTGCCGAAGCACAAAAAGCCGGTGGTATCGCTGCTTTTAT
TGATGCCGAACACGCTTTCGACCGTTTCTATGCAGCCAAACTGGGAGTTAACATTGACGATTTGTATATTTCCCAACCGG
ATAACGGAGAGCAGGCATTGGAAATCGCCGAACAACTGATCCGCTCCTCCGCTATCGATATCATTGTTATCGACTCCGTA
GCCGCATTGACCCCTAAAGCTGAAATCGAAGGCGATATGGGTGACAACAAAGTAGGTCTTCAGGCACGTTTGATGTCGCA
GGCATTACGTAAACTGACAGCAGCCGTTAGTAAGACACGTACTACTTGCATCTTTATCAATCAGCTCCGCGAGAAAATCG
GTGTTATGTTCGGTAACCCAGAAACAACAACCGGTGGTAACGCACTGAAGTTCTATGCTTCCGTTCGTTTGGATATTCGC
GGTAGCCAAGCGATTAAAGACGGCGAAGAGGTACTCGGAAAGCTGACTAAAGTGAAAGTGGTGAAGAACAAGGTGGCACC
TCCTTTCCGCAGAGCAGAATTCGACATAATGTTCGGTGAAGGTATCTCCCACTCCGGAGAAATCATCGACTTGGGCGCCG
ATCTGGGAATTATCAAGAAAAGCGGTTCATGGTATAGCTACAATGATACAAAGCTAGGTCAGGGACGTGATGCTGCAAAA
CAATGTATCGCTGACAATCCGGAGCTTGCAGAAGAACTGGAGGGCTTGATTTTTGAAGCACTAAAGAAAGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

69.617

98.547

0.686
  recA Ralstonia pseudosolanacearum GMI1000

67.385

94.477

0.637
  recA Streptococcus mitis NCTC 12261

63.905

98.256

0.628
  recA Streptococcus mitis SK321

63.905

98.256

0.628
  recA Neisseria gonorrhoeae MS11

66.77

93.605

0.625
  recA Neisseria gonorrhoeae MS11

66.77

93.605

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.77

93.605

0.625
  recA Streptococcus pneumoniae R6

63.314

98.256

0.622
  recA Streptococcus pneumoniae Rx1

63.314

98.256

0.622
  recA Streptococcus pneumoniae D39

63.314

98.256

0.622
  recA Streptococcus pneumoniae TIGR4

63.314

98.256

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.619

91.57

0.619
  recA Glaesserella parasuis strain SC1401

62.242

98.547

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

67.628

90.698

0.613
  recA Streptococcus pyogenes NZ131

62.13

98.256

0.61
  recA Streptococcus mutans UA159

61.538

98.256

0.605
  recA Lactococcus lactis subsp. cremoris KW2

60.947

98.256

0.599
  recA Helicobacter pylori strain NCTC11637

62.963

94.186

0.593
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.355

98.256

0.593
  recA Helicobacter pylori 26695

62.654

94.186

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

93.605

0.587
  recA Vibrio cholerae strain A1552

62.733

93.605

0.587
  recA Acinetobacter baumannii D1279779

62.422

93.605

0.584
  recA Acinetobacter baylyi ADP1

62.112

93.605

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

62.696

92.733

0.581
  recA Pseudomonas stutzeri DSM 10701

63.175

91.57

0.578