Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   I6I58_RS03210 Genome accession   NZ_CP068172
Coordinates   612224..613258 (+) Length   344 a.a.
NCBI ID   WP_012660901.1    Uniprot ID   B9KEN1
Organism   Campylobacter lari strain FDAARGOS_1101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 607224..618258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I58_RS03180 (I6I58_03180) - 607565..608743 (+) 1179 WP_074693053.1 cation:proton antiporter -
  I6I58_RS03185 (I6I58_03185) - 608783..609541 (+) 759 WP_074693052.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  I6I58_RS03190 (I6I58_03190) - 609541..610191 (+) 651 WP_070255483.1 hypothetical protein -
  I6I58_RS03195 (I6I58_03195) - 610184..610960 (-) 777 WP_012660904.1 UDP-N-acetylmuramate dehydrogenase -
  I6I58_RS03200 (I6I58_03200) fliQ 610957..611223 (-) 267 WP_012660903.1 flagellar biosynthesis protein FliQ -
  I6I58_RS03205 (I6I58_03205) - 611250..612113 (-) 864 WP_012660902.1 menaquinone biosynthesis family protein -
  I6I58_RS03210 (I6I58_03210) recA 612224..613258 (+) 1035 WP_012660901.1 recombinase RecA Machinery gene
  I6I58_RS03215 (I6I58_03215) eno 613258..614502 (+) 1245 WP_074693050.1 phosphopyruvate hydratase -
  I6I58_RS03220 (I6I58_03220) - 614604..614780 (+) 177 WP_173787953.1 hypothetical protein -
  I6I58_RS03225 (I6I58_03225) - 614770..615453 (+) 684 WP_012660898.1 AMIN domain-containing protein -
  I6I58_RS03230 (I6I58_03230) - 615468..615851 (-) 384 WP_074693048.1 group III truncated hemoglobin -
  I6I58_RS03235 (I6I58_03235) - 615960..616436 (+) 477 WP_074693047.1 cysteine permease -
  I6I58_RS03240 (I6I58_03240) - 616405..617715 (-) 1311 WP_074693045.1 MFS transporter -
  I6I58_RS03245 (I6I58_03245) - 617718..617879 (-) 162 WP_012660894.1 highly acidic protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 37173.59 Da        Isoelectric Point: 5.3375

>NTDB_id=527773 I6I58_RS03210 WP_012660901.1 612224..613258(+) (recA) [Campylobacter lari strain FDAARGOS_1101]
MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEKIDSIPTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIA
ECQKKGGVCAFIDAEHALDVKYAKNLGVDTENLYISQPDFGEQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRLDVRKTATLKQNDEPIGN
RVKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQGRENAKAFLKENPAIADEIT
QAIQNSIGIDSMILGAKEDDEGEE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=527773 I6I58_RS03210 WP_012660901.1 612224..613258(+) (recA) [Campylobacter lari strain FDAARGOS_1101]
ATGGATGATAATAAAAGAAAATCACTTGATGCAGCCTTAAAAAGTCTTGATAAAACCTTTGGAAAAGGTACTATTTTAAG
ACTTGGCGATAAAGAAGTTGAAAAAATTGATTCTATTCCTACAGGTTCGGTTGGACTGGATTTAGCTTTAGGAATTGGCG
GGGTTCCAAAAGGAAGAATTATAGAAATTTATGGACCTGAAAGTTCAGGTAAAACCACACTTACCTTACACATCATAGCA
GAATGTCAAAAAAAAGGCGGAGTTTGTGCGTTTATAGATGCTGAGCATGCTCTTGATGTAAAATATGCGAAAAATTTGGG
TGTAGATACAGAAAATCTTTACATCTCTCAACCTGATTTTGGTGAGCAAGCTTTAGAGATTGTTGAAACTATAGCAAGAA
GTGGGGCTATTGATTTAATAGTAGTAGATAGTGTGGCCGCACTTACTCCAAAAGCTGAAATAGAAGGCGATATGGGAGAT
CAACATGTAGGTCTTCAAGCAAGATTAATGAGCCAAGCTTTAAGAAAATTAACCGGAATAGTGCATAAAATGAACACAAC
GGTGATTTTTATCAATCAAATTCGTATGAAAATAGGTATGATGGGTTATGGCACTCCAGAAACTACAACAGGTGGTAATG
CACTTAAATTTTACTCTTCAGTGCGTTTAGATGTTAGAAAAACCGCTACTTTAAAACAAAACGATGAGCCTATTGGAAAC
CGCGTTAAAGTAAAAGTAGCCAAAAACAAAGTCGCACCTCCATTTAAACAAGCTGAATTTGATGTGATGTTTGGAGAGGG
TGTTAGCCGTGAGGGCGAGTTAATAGATTATGGTGTGAAACTTGATATTATCGATAAAAGTGGTGCGTGGTTTTCTTATA
AAGCTTCTAAACTTGGTCAAGGTAGAGAAAATGCTAAAGCCTTTTTGAAAGAAAATCCAGCTATTGCAGATGAAATCACT
CAAGCTATACAAAATTCCATTGGCATTGATAGCATGATTTTAGGTGCAAAAGAAGATGATGAGGGAGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB B9KEN1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.151

100

0.922

  recA Helicobacter pylori 26695

78.443

97.093

0.762

  recA Helicobacter pylori strain NCTC11637

78.144

97.093

0.759

  recA Neisseria gonorrhoeae MS11

64.928

100

0.651

  recA Neisseria gonorrhoeae MS11

64.928

100

0.651

  recA Neisseria gonorrhoeae strain FA1090

64.928

100

0.651

  recA Glaesserella parasuis strain SC1401

62.391

99.709

0.622

  recA Acinetobacter baylyi ADP1

62.209

100

0.622

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.855

96.512

0.616

  recA Bacillus subtilis subsp. subtilis str. 168

63.72

95.349

0.608

  recA Acinetobacter baumannii D1279779

63.914

95.058

0.608

  recA Pseudomonas stutzeri DSM 10701

62.84

96.221

0.605

  recA Vibrio cholerae strain A1552

62.346

94.186

0.587

  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.346

94.186

0.587

  recA Ralstonia pseudosolanacearum GMI1000

63.722

92.151

0.587

  recA Streptococcus pyogenes NZ131

59.091

95.93

0.567

  recA Streptococcus mitis NCTC 12261

58.359

95.64

0.558

  recA Streptococcus mutans UA159

58.006

96.221

0.558

  recA Streptococcus pneumoniae TIGR4

58.055

95.64

0.555

  recA Streptococcus pneumoniae Rx1

58.055

95.64

0.555

  recA Streptococcus pneumoniae D39

58.055

95.64

0.555

  recA Streptococcus pneumoniae R6

58.055

95.64

0.555

  recA Latilactobacillus sakei subsp. sakei 23K

58.41

95.058

0.555

  recA Streptococcus mitis SK321

57.751

95.64

0.552

  recA Lactococcus lactis subsp. cremoris KW2

56.839

95.64

0.544

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.481

94.186

0.532