Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6I61_RS09950 Genome accession   NZ_CP068171
Coordinates   2145674..2146675 (-) Length   333 a.a.
NCBI ID   WP_130915321.1    Uniprot ID   -
Organism   Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2140674..2151675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I61_RS09935 (I6I61_09935) - 2140812..2141489 (-) 678 WP_130915324.1 response regulator transcription factor -
  I6I61_RS09940 (I6I61_09940) - 2141678..2144311 (+) 2634 WP_130915323.1 outer membrane beta-barrel protein -
  I6I61_RS09945 (I6I61_09945) - 2144332..2145546 (+) 1215 WP_130915322.1 hypothetical protein -
  I6I61_RS09950 (I6I61_09950) recA 2145674..2146675 (-) 1002 WP_130915321.1 recombinase RecA Machinery gene
  I6I61_RS09955 (I6I61_09955) - 2146848..2148044 (-) 1197 WP_130915320.1 oxygenase MpaB family protein -
  I6I61_RS09970 (I6I61_09970) - 2148409..2150250 (-) 1842 WP_130915319.1 lysophospholipid acyltransferase family protein -
  I6I61_RS09975 (I6I61_09975) - 2150274..2151512 (-) 1239 WP_089741918.1 aspartate kinase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35737.93 Da        Isoelectric Point: 5.3395

>NTDB_id=527757 I6I61_RS09950 WP_130915321.1 2145674..2146675(-) (recA) [Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDDSVDNTIEVIPSGSLGLDIALGVGGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRSYASKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRVDIRKASAPIKNGDEA
IGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKVGEILDTAVDLGVVKKSGSWFSYEDSKLGQGRDSVKDVLKDNPELAE
EIEGKIKEELKNK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=527757 I6I61_RS09950 WP_130915321.1 2145674..2146675(-) (recA) [Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104]
ATGAGTAATATTGACGATAAGAAAAAAGCACTTGCACTGGTGCTTGATAAATTAGATAAAACGTACGGGAAAGGTACGGT
GATGACATTAGGAGATGATTCTGTTGACAACACGATTGAAGTAATACCTTCGGGCTCTTTAGGATTAGACATTGCATTAG
GAGTAGGTGGTTACCCAAGAGGAAGAATTATTGAAATTTATGGTCCGGAATCTTCGGGTAAAACAACTTTAACGCTGCAT
GCTATTGCAGAAGCTCAGAAAGCCGGCGGAATTGCTGCTTTTATTGATGCTGAACACGCTTTCGACAGGTCTTATGCTTC
AAAGCTGGGTATTGATCTGGAGAATCTGATCATTTCGCAGCCGGATAACGGTGAGCAGGCTTTGGAAATTGCAGACAATC
TTATCCGTTCCGGAGCTATTGATATTGTGGTAATTGACTCTGTAGCTGCATTGACTCCTAAAGCGGAAATTGAAGGCGAA
ATGGGAGATTCTAAAATGGGTCTTCATGCAAGATTGATGTCTCAGGCTCTAAGAAAGTTAACGGCCACTATTTCCAGAAC
AAAATGTACTGTGATTTTCATTAACCAGTTGAGAGAAAAAATCGGGGTGATGTTTGGAAACCCTGAAACAACAACAGGTG
GCAATGCCCTTAAGTTTTATGCTTCTGTAAGAGTTGATATCAGAAAGGCAAGTGCTCCTATTAAAAACGGAGATGAAGCT
ATCGGAAGTCGTGTGAAGGTGAAGATTGTGAAAAATAAAGTTGCCCCTCCTTTCAAACAGGCTGAATTTGATATTATGTA
CGGAGAAGGAGTTTCTAAAGTAGGAGAGATTCTTGATACCGCAGTTGACTTGGGTGTTGTTAAGAAAAGCGGATCATGGT
TCAGCTATGAAGATTCTAAGCTGGGACAGGGGAGAGATTCTGTAAAAGATGTACTGAAAGACAATCCTGAACTGGCGGAG
GAAATAGAAGGTAAAATCAAAGAAGAACTGAAAAATAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

80.48

100

0.805
  recA Acinetobacter baylyi ADP1

64.438

98.799

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

98.198

0.637
  recA Acinetobacter baumannii D1279779

64.417

97.898

0.631
  recA Glaesserella parasuis strain SC1401

63.609

98.198

0.625
  recA Ralstonia pseudosolanacearum GMI1000

66.454

93.994

0.625
  recA Helicobacter pylori 26695

63.303

98.198

0.622
  recA Helicobacter pylori strain NCTC11637

63.303

98.198

0.622
  recA Neisseria gonorrhoeae MS11

63.158

96.997

0.613
  recA Neisseria gonorrhoeae strain FA1090

63.158

96.997

0.613
  recA Neisseria gonorrhoeae MS11

63.158

96.997

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

62.27

97.898

0.61
  recA Pseudomonas stutzeri DSM 10701

61.656

97.898

0.604
  recA Streptococcus mitis SK321

60.308

97.598

0.589
  recA Streptococcus mitis NCTC 12261

60.308

97.598

0.589
  recA Streptococcus pyogenes NZ131

60.123

97.898

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.756

98.498

0.589
  recA Vibrio cholerae strain A1552

59.756

98.498

0.589
  recA Lactococcus lactis subsp. cremoris KW2

59.816

97.898

0.586
  recA Streptococcus pneumoniae Rx1

59.146

98.498

0.583
  recA Streptococcus pneumoniae D39

59.146

98.498

0.583
  recA Streptococcus pneumoniae R6

59.146

98.498

0.583
  recA Streptococcus pneumoniae TIGR4

59.146

98.498

0.583
  recA Streptococcus mutans UA159

59.202

97.898

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

59.443

96.997

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.923

97.598

0.556