Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6I62_RS08080 Genome accession   NZ_CP068170
Coordinates   1660325..1661362 (-) Length   345 a.a.
NCBI ID   WP_008792720.1    Uniprot ID   A0A3E3ABG4
Organism   Thomasclavelia ramosa strain FDAARGOS_1105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1655325..1666362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I62_RS08065 (I6I62_08065) - 1655384..1656157 (-) 774 WP_003534396.1 TIGR00282 family metallophosphoesterase -
  I6I62_RS08070 (I6I62_08070) rny 1656199..1657755 (-) 1557 WP_201900496.1 ribonuclease Y -
  I6I62_RS08075 (I6I62_08075) - 1658055..1660226 (+) 2172 WP_201900497.1 DNA topoisomerase III -
  I6I62_RS08080 (I6I62_08080) recA 1660325..1661362 (-) 1038 WP_008792720.1 recombinase RecA Machinery gene
  I6I62_RS08085 (I6I62_08085) - 1661401..1661859 (-) 459 WP_003534406.1 CinA family protein -
  I6I62_RS08090 (I6I62_08090) pgsA 1661859..1662452 (-) 594 WP_003534408.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6I62_RS08095 (I6I62_08095) - 1662452..1663444 (-) 993 WP_003534410.1 helix-turn-helix domain-containing protein -
  I6I62_RS08100 (I6I62_08100) fucO 1663827..1664972 (-) 1146 WP_003534412.1 lactaldehyde reductase -
  I6I62_RS08105 (I6I62_08105) - 1665113..1665667 (-) 555 WP_008792721.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37377.73 Da        Isoelectric Point: 5.1043

>NTDB_id=527742 I6I62_RS08080 WP_008792720.1 1660325..1661362(-) (recA) [Thomasclavelia ramosa strain FDAARGOS_1105]
MAEAKTKENKEEAKKVQALDDAIKQIEKKYGKGSVMKLGDRAAVSVDVIPTGSLTLDLALGIGGYPKGRIIEIYGPESSG
KTTLTLHAIAECQKQGGRAAFIDAEHAIDPVYAQNLGVNIDELILSQPDSGEQGLEIAETLVRSGAIDLVVVDSVAALVP
QVELDGEMGDSQMGLQARLMSKALRKIAAELNKSECTIIFINQLREKIGIMFGNPETTTGGRALKFYSSVRVEIRRSEAI
KLGTEIVGNKVNIKVVKNKVAPPFKTTQVDIIYGKGISRDGEVLDLAVEKDIVEKSGAWYAYKGEKIGQGRENAKTFLST
HSEIMEEITQAIKDSLESDNKSEQE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=527742 I6I62_RS08080 WP_008792720.1 1660325..1661362(-) (recA) [Thomasclavelia ramosa strain FDAARGOS_1105]
ATGGCAGAAGCAAAGACTAAAGAGAATAAAGAAGAAGCTAAAAAAGTCCAAGCTTTGGATGATGCAATTAAGCAAATTGA
AAAAAAATACGGAAAAGGTTCTGTAATGAAATTAGGTGATCGCGCTGCCGTTAGTGTTGATGTAATTCCTACTGGTTCTT
TAACTTTAGATTTAGCTTTAGGAATCGGCGGATATCCTAAAGGAAGAATTATTGAGATTTACGGACCTGAATCTAGTGGT
AAAACAACATTGACATTACATGCCATTGCTGAATGTCAAAAACAAGGAGGACGTGCTGCTTTTATTGATGCAGAACATGC
TATTGATCCTGTTTATGCGCAAAATTTGGGAGTTAATATTGATGAATTAATTCTTTCACAGCCTGATTCTGGAGAACAAG
GACTAGAAATTGCTGAAACTTTGGTTCGTTCAGGTGCGATTGATTTAGTTGTTGTCGATTCGGTTGCGGCATTAGTGCCT
CAAGTAGAACTTGATGGTGAAATGGGTGATTCGCAAATGGGACTTCAAGCACGTTTGATGTCTAAAGCGTTAAGAAAAAT
TGCGGCAGAATTAAATAAATCTGAATGTACGATTATTTTTATTAATCAATTGAGAGAAAAGATTGGGATTATGTTTGGTA
ATCCAGAAACAACAACAGGAGGAAGAGCATTAAAATTCTATTCTTCTGTTCGGGTCGAAATTCGTCGTAGTGAAGCAATT
AAATTAGGAACAGAAATTGTTGGAAATAAAGTGAATATTAAAGTTGTTAAAAATAAAGTTGCTCCACCGTTTAAAACTAC
ACAAGTAGATATTATTTATGGTAAAGGAATTTCTCGTGATGGTGAAGTACTTGATTTGGCAGTAGAAAAAGATATTGTTG
AAAAGAGTGGAGCATGGTATGCGTATAAAGGTGAAAAAATAGGTCAAGGGCGTGAAAATGCTAAGACTTTCTTAAGTACT
CATAGTGAAATTATGGAAGAAATTACACAGGCAATCAAAGACTCCTTAGAGAGCGATAATAAAAGTGAGCAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E3ABG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

63.506

100

0.641
  recA Bacillus subtilis subsp. subtilis str. 168

68.111

93.623

0.638
  recA Streptococcus pyogenes NZ131

63.127

98.261

0.62
  recA Streptococcus pneumoniae R6

64.742

95.362

0.617
  recA Streptococcus pneumoniae TIGR4

64.742

95.362

0.617
  recA Streptococcus pneumoniae Rx1

64.742

95.362

0.617
  recA Streptococcus pneumoniae D39

64.742

95.362

0.617
  recA Streptococcus mitis NCTC 12261

65.337

94.493

0.617
  recA Streptococcus mitis SK321

65.031

94.493

0.614
  recA Acinetobacter baumannii D1279779

64.286

93.333

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.117

98.841

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

64.873

91.594

0.594
  recA Lactococcus lactis subsp. cremoris KW2

62.769

94.203

0.591
  recA Helicobacter pylori strain NCTC11637

62.27

94.493

0.588
  recA Acinetobacter baylyi ADP1

63.043

93.333

0.588
  recA Helicobacter pylori 26695

61.963

94.493

0.586
  recA Glaesserella parasuis strain SC1401

60.843

96.232

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.92

93.623

0.58
  recA Pseudomonas stutzeri DSM 10701

62.112

93.333

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

93.333

0.577
  recA Vibrio cholerae strain A1552

61.801

93.333

0.577
  recA Ralstonia pseudosolanacearum GMI1000

62.058

90.145

0.559
  recA Neisseria gonorrhoeae strain FA1090

62.258

89.855

0.559
  recA Neisseria gonorrhoeae MS11

62.258

89.855

0.559
  recA Neisseria gonorrhoeae MS11

62.258

89.855

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.317

95.072

0.545