Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | I6J07_RS05540 | Genome accession | NZ_CP068063 |
| Coordinates | 1093273..1094319 (-) | Length | 348 a.a. |
| NCBI ID | WP_002507827.1 | Uniprot ID | A0A9X4L1K2 |
| Organism | Staphylococcus equorum strain FDAARGOS_1150 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1095042..1173466 | 1093273..1094319 | flank | 723 |
Gene organization within MGE regions
Location: 1093273..1173466
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J07_RS05540 (I6J07_05545) | recA | 1093273..1094319 (-) | 1047 | WP_002507827.1 | recombinase RecA | Machinery gene |
| I6J07_RS05545 (I6J07_05550) | - | 1094493..1095635 (-) | 1143 | WP_002507828.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| I6J07_RS05550 (I6J07_05555) | pgsA | 1095943..1096521 (-) | 579 | WP_002507829.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| I6J07_RS05555 (I6J07_05560) | - | 1096574..1096966 (-) | 393 | WP_002507830.1 | helix-turn-helix domain-containing protein | - |
| I6J07_RS05560 (I6J07_05565) | - | 1097000..1097830 (-) | 831 | WP_002507831.1 | YmfK family protein | - |
| I6J07_RS05565 (I6J07_05570) | ymfI | 1097994..1098698 (-) | 705 | WP_002507832.1 | elongation factor P 5-aminopentanone reductase | - |
| I6J07_RS05570 (I6J07_05575) | yfmH | 1098700..1099986 (-) | 1287 | WP_002507833.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| I6J07_RS05575 (I6J07_05580) | yfmF | 1099986..1101275 (-) | 1290 | WP_002507834.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| I6J07_RS05580 (I6J07_05585) | - | 1101286..1101999 (-) | 714 | WP_002507835.1 | GntR family transcriptional regulator | - |
| I6J07_RS13950 | - | 1102002..1103447 (-) | 1446 | Protein_1064 | DNA translocase FtsK | - |
| I6J07_RS13955 | - | 1103627..1104452 (-) | 826 | Protein_1065 | DNA translocase FtsK 4TM domain-containing protein | - |
| I6J07_RS05590 (I6J07_05595) | rnjB | 1104760..1106433 (-) | 1674 | WP_002507837.1 | ribonuclease J2 | - |
| I6J07_RS05595 (I6J07_05600) | pnp | 1106833..1108932 (-) | 2100 | WP_002507838.1 | polyribonucleotide nucleotidyltransferase | - |
| I6J07_RS05600 (I6J07_05605) | rpsO | 1109087..1109356 (-) | 270 | WP_103170046.1 | 30S ribosomal protein S15 | - |
| I6J07_RS05605 (I6J07_05610) | ribF | 1109461..1110432 (-) | 972 | WP_002507840.1 | riboflavin biosynthesis protein RibF | - |
| I6J07_RS05610 (I6J07_05615) | truB | 1110446..1111363 (-) | 918 | WP_002507841.1 | tRNA pseudouridine(55) synthase TruB | - |
| I6J07_RS05615 (I6J07_05620) | rbfA | 1111492..1111839 (-) | 348 | WP_031265894.1 | 30S ribosome-binding factor RbfA | - |
| I6J07_RS05620 (I6J07_05625) | - | 1112275..1113147 (+) | 873 | WP_002507843.1 | HTH domain-containing protein | - |
| I6J07_RS05625 (I6J07_05630) | - | 1113212..1114207 (-) | 996 | WP_230456621.1 | hypothetical protein | - |
| I6J07_RS05630 (I6J07_05635) | infB | 1114729..1116804 (-) | 2076 | WP_103170047.1 | translation initiation factor IF-2 | - |
| I6J07_RS05635 (I6J07_05640) | - | 1116809..1117126 (-) | 318 | WP_002507846.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| I6J07_RS05640 (I6J07_05645) | rnpM | 1117123..1117407 (-) | 285 | WP_002507847.1 | RNase P modulator RnpM | - |
| I6J07_RS05645 (I6J07_05650) | nusA | 1117425..1118600 (-) | 1176 | WP_103170049.1 | transcription termination factor NusA | - |
| I6J07_RS05650 (I6J07_05655) | rimP | 1118624..1119091 (-) | 468 | WP_002507849.1 | ribosome maturation factor RimP | - |
| I6J07_RS05655 (I6J07_05660) | - | 1119259..1123575 (-) | 4317 | WP_002512314.1 | PolC-type DNA polymerase III | - |
| I6J07_RS05660 (I6J07_05665) | - | 1123939..1125639 (-) | 1701 | WP_002512313.1 | proline--tRNA ligase | - |
| I6J07_RS05665 (I6J07_05670) | rseP | 1125659..1126945 (-) | 1287 | WP_002507852.1 | RIP metalloprotease RseP | - |
| I6J07_RS05670 (I6J07_05675) | - | 1127273..1128055 (-) | 783 | WP_002507853.1 | phosphatidate cytidylyltransferase | - |
| I6J07_RS05675 (I6J07_05680) | - | 1128073..1128837 (-) | 765 | WP_002507854.1 | isoprenyl transferase | - |
| I6J07_RS05680 (I6J07_05685) | frr | 1129071..1129625 (-) | 555 | WP_002507855.1 | ribosome recycling factor | - |
| I6J07_RS05685 (I6J07_05690) | pyrH | 1129642..1130364 (-) | 723 | WP_002507856.1 | UMP kinase | - |
| I6J07_RS05690 (I6J07_05695) | tsf | 1130497..1131375 (-) | 879 | WP_002507857.1 | translation elongation factor Ts | - |
| I6J07_RS05695 (I6J07_05700) | rpsB | 1131470..1132258 (-) | 789 | WP_002507858.1 | 30S ribosomal protein S2 | - |
| I6J07_RS05700 (I6J07_05705) | codY | 1132510..1133283 (-) | 774 | WP_002507859.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| I6J07_RS05705 (I6J07_05710) | hslU | 1133307..1134722 (-) | 1416 | WP_002507860.1 | ATP-dependent protease ATPase subunit HslU | - |
| I6J07_RS05710 (I6J07_05715) | hslV | 1134856..1135398 (-) | 543 | WP_002507861.1 | ATP-dependent protease subunit HslV | - |
| I6J07_RS05715 (I6J07_05720) | xerC | 1135402..1136292 (-) | 891 | WP_002507862.1 | tyrosine recombinase XerC | - |
| I6J07_RS05720 (I6J07_05725) | trmFO | 1136411..1137718 (-) | 1308 | WP_002507863.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| I6J07_RS05725 (I6J07_05730) | topA | 1137884..1139953 (-) | 2070 | WP_002507864.1 | type I DNA topoisomerase | - |
| I6J07_RS05730 (I6J07_05735) | dprA | 1140163..1141032 (-) | 870 | WP_103170051.1 | DNA-processing protein DprA | - |
| I6J07_RS05735 (I6J07_05740) | sucD | 1141498..1142406 (-) | 909 | WP_002507866.1 | succinate--CoA ligase subunit alpha | - |
| I6J07_RS05740 (I6J07_05745) | sucC | 1142427..1143593 (-) | 1167 | WP_002507867.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| I6J07_RS05745 (I6J07_05750) | - | 1143701..1144471 (-) | 771 | WP_002512309.1 | ribonuclease HII | - |
| I6J07_RS05750 (I6J07_05755) | ylqF | 1144479..1145339 (-) | 861 | WP_002507869.1 | ribosome biogenesis GTPase YlqF | - |
| I6J07_RS05755 (I6J07_05760) | - | 1145724..1148321 (+) | 2598 | WP_002507870.1 | YfhO family protein | - |
| I6J07_RS05760 (I6J07_05765) | - | 1148358..1150974 (+) | 2617 | Protein_1100 | YfhO family protein | - |
| I6J07_RS05765 (I6J07_05770) | rplS | 1151391..1151741 (-) | 351 | WP_002507872.1 | 50S ribosomal protein L19 | - |
| I6J07_RS05770 (I6J07_05775) | trmD | 1151843..1152580 (-) | 738 | WP_002507873.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| I6J07_RS05775 (I6J07_05780) | rimM | 1152580..1153083 (-) | 504 | WP_002507874.1 | ribosome maturation factor RimM | - |
| I6J07_RS05780 (I6J07_05785) | rpsP | 1153305..1153571 (-) | 267 | WP_002507875.1 | 30S ribosomal protein S16 | - |
| I6J07_RS05785 (I6J07_05790) | - | 1154059..1154811 (+) | 753 | WP_002507876.1 | 3-oxoacyl-ACP reductase | - |
| I6J07_RS05790 (I6J07_05795) | - | 1154838..1156151 (+) | 1314 | WP_002512306.1 | LLM class flavin-dependent oxidoreductase | - |
| I6J07_RS05795 (I6J07_05800) | ffh | 1156685..1158052 (-) | 1368 | WP_103170052.1 | signal recognition particle protein | - |
| I6J07_RS05800 (I6J07_05805) | - | 1158078..1158410 (-) | 333 | WP_002507879.1 | putative DNA-binding protein | - |
| I6J07_RS05805 (I6J07_05810) | ftsY | 1158397..1159629 (-) | 1233 | WP_002507880.1 | signal recognition particle-docking protein FtsY | - |
| I6J07_RS05810 (I6J07_05815) | smc | 1159626..1163195 (-) | 3570 | WP_002507881.1 | chromosome segregation protein SMC | - |
| I6J07_RS05815 (I6J07_05820) | rnc | 1163351..1164061 (-) | 711 | WP_370736906.1 | ribonuclease III | - |
| I6J07_RS05820 (I6J07_05825) | - | 1164297..1164530 (-) | 234 | WP_002507883.1 | acyl carrier protein | - |
| I6J07_RS05825 (I6J07_05830) | fabG | 1164780..1165514 (-) | 735 | WP_002507884.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| I6J07_RS05830 (I6J07_05835) | fabD | 1165507..1166433 (-) | 927 | WP_002507885.1 | ACP S-malonyltransferase | - |
| I6J07_RS05835 (I6J07_05840) | plsX | 1166426..1167412 (-) | 987 | WP_103170054.1 | phosphate acyltransferase PlsX | - |
| I6J07_RS05840 (I6J07_05845) | fapR | 1167405..1167974 (-) | 570 | WP_002507887.1 | transcription factor FapR | - |
| I6J07_RS05845 (I6J07_05850) | - | 1168315..1169874 (+) | 1560 | WP_103170055.1 | M4 family metallopeptidase | - |
| I6J07_RS05850 (I6J07_05855) | recG | 1170272..1172317 (-) | 2046 | WP_002512301.1 | ATP-dependent DNA helicase RecG | - |
| I6J07_RS05855 (I6J07_05860) | sdaAA | 1172320..1173189 (-) | 870 | WP_002507890.1 | L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37775.91 Da Isoelectric Point: 5.2212
>NTDB_id=526879 I6J07_RS05540 WP_002507827.1 1093273..1094319(-) (recA) [Staphylococcus equorum strain FDAARGOS_1150]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKAQRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKTGGIAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSKTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDMMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKLYLKENPEIKEDINR
RLREALGIIDGDVKEDESEKQTTLLEDE
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKAQRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKTGGIAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSKTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDMMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKLYLKENPEIKEDINR
RLREALGIIDGDVKEDESEKQTTLLEDE
Nucleotide
Download Length: 1047 bp
>NTDB_id=526879 I6J07_RS05540 WP_002507827.1 1093273..1094319(-) (recA) [Staphylococcus equorum strain FDAARGOS_1150]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGCGCAGTTATGAA
ATTAGGCGATAATAAAGCCCAAAGAGTGTCTAGCGTTTCAAGTGGTTCAGTTACTTTGGATAATGCTTTAGGTGTAGGTG
GCTACCCTAAAGGAAGAATTATAGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTAGCATTACATGCTATTGCA
GAAGTACAAAAAACTGGTGGGATTGCGGCGTTTATTGATGCTGAACATGCGTTAGATCCTGTCTATGCAGAAGCTTTAGG
TGTAGATATTCAAAATCTATATTTATCTCAACCTGACCATGGGGAACAAGGATTGGAAATTGCCGAAGCATTCGTTAGAA
GTGGTGCTGTTGACATCGTAGTTGTTGACTCCGTTGCTGCGTTAACTCCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCGCGTTTAATGTCACAAGCATTGCGTAAACTTTCAGGCGCTATTTCTAAATCAAAAACAAC
AGCAGTATTTATTAACCAAATTCGCGAAAAAGTAGGCGTGATGTTCGGTAATCCTGAAGTAACACCGGGTGGACGTGCAT
TGAAATTCTATAGTTCTGTACGTTTAGAAGTACGTCGTGCTGAACAATTAAAACAAGGCCAAGATATTGTTGGTAATAGA
ACGAAAATTAAAGTTGTTAAAAATAAAGTAGCACCGCCATTCAGAGTTGCAGAAGTGGATATGATGTATGGTAAAGGTAT
CTCTAAAGAAGGAGAACTTATTGACTTAGGTGTTGAAAATGAAATTGTAGATAAATCAGGTGCTTGGTATTCATACAATG
GAGATCGTATGGGACAAGGTAAAGAAAATGTTAAATTATATCTGAAAGAAAACCCTGAAATCAAAGAAGATATTAATCGT
AGATTGCGTGAAGCTCTAGGCATTATCGATGGTGATGTTAAAGAAGACGAAAGTGAAAAACAAACTACGCTTCTTGAAGA
TGAATAG
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGCGCAGTTATGAA
ATTAGGCGATAATAAAGCCCAAAGAGTGTCTAGCGTTTCAAGTGGTTCAGTTACTTTGGATAATGCTTTAGGTGTAGGTG
GCTACCCTAAAGGAAGAATTATAGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTAGCATTACATGCTATTGCA
GAAGTACAAAAAACTGGTGGGATTGCGGCGTTTATTGATGCTGAACATGCGTTAGATCCTGTCTATGCAGAAGCTTTAGG
TGTAGATATTCAAAATCTATATTTATCTCAACCTGACCATGGGGAACAAGGATTGGAAATTGCCGAAGCATTCGTTAGAA
GTGGTGCTGTTGACATCGTAGTTGTTGACTCCGTTGCTGCGTTAACTCCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCGCGTTTAATGTCACAAGCATTGCGTAAACTTTCAGGCGCTATTTCTAAATCAAAAACAAC
AGCAGTATTTATTAACCAAATTCGCGAAAAAGTAGGCGTGATGTTCGGTAATCCTGAAGTAACACCGGGTGGACGTGCAT
TGAAATTCTATAGTTCTGTACGTTTAGAAGTACGTCGTGCTGAACAATTAAAACAAGGCCAAGATATTGTTGGTAATAGA
ACGAAAATTAAAGTTGTTAAAAATAAAGTAGCACCGCCATTCAGAGTTGCAGAAGTGGATATGATGTATGGTAAAGGTAT
CTCTAAAGAAGGAGAACTTATTGACTTAGGTGTTGAAAATGAAATTGTAGATAAATCAGGTGCTTGGTATTCATACAATG
GAGATCGTATGGGACAAGGTAAAGAAAATGTTAAATTATATCTGAAAGAAAACCCTGAAATCAAAGAAGATATTAATCGT
AGATTGCGTGAAGCTCTAGGCATTATCGATGGTGATGTTAAAGAAGACGAAAGTGAAAAACAAACTACGCTTCTTGAAGA
TGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.