Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6J17_RS02685 Genome accession   NZ_CP068054
Coordinates   519299..520366 (-) Length   355 a.a.
NCBI ID   WP_029141540.1    Uniprot ID   A0A8B4BQF4
Organism   Heyndrickxia coagulans strain FDAARGOS_1160     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 514299..525366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J17_RS02665 (I6J17_02665) - 514632..515543 (-) 912 WP_035176070.1 peptidase U32 family protein -
  I6J17_RS02670 (I6J17_02670) spoVS 515744..516004 (-) 261 WP_013859169.1 stage V sporulation protein SpoVS -
  I6J17_RS02675 (I6J17_02675) - 516375..517175 (-) 801 WP_013859168.1 TIGR00282 family metallophosphoesterase -
  I6J17_RS02680 (I6J17_02680) rny 517262..518824 (-) 1563 WP_029141539.1 ribonuclease Y -
  I6J17_RS02685 (I6J17_02685) recA 519299..520366 (-) 1068 WP_029141540.1 recombinase RecA Machinery gene
  I6J17_RS02690 (I6J17_02690) cinA 520636..521868 (-) 1233 WP_029141541.1 competence/damage-inducible protein A Machinery gene
  I6J17_RS02695 (I6J17_02695) pgsA 522040..522618 (-) 579 WP_019721121.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6J17_RS02700 (I6J17_02700) - 522674..523579 (-) 906 WP_029141542.1 RodZ family helix-turn-helix domain-containing protein -
  I6J17_RS02705 (I6J17_02705) - 523596..524387 (-) 792 WP_017554614.1 DUF3388 domain-containing protein -
  I6J17_RS02710 (I6J17_02710) - 524579..524839 (-) 261 WP_013859159.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38376.34 Da        Isoelectric Point: 4.6871

>NTDB_id=526594 I6J17_RS02685 WP_029141540.1 519299..520366(-) (recA) [Heyndrickxia coagulans strain FDAARGOS_1160]
MNDRQQALDQALKQIEKQFGKGSIMRLGEQTDRVVSTIPTGSLALDIALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPRAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQIKQGSDIVGNKT
KIKVVKNKVAPPFKTAEVDIMYGEGISKEGEIVDMGSDLDIIQKSGAWYAYNGERLGQGRENAKQFLKENADLKNEIAAK
IREHYDLAEDAGSHETENAADEKEAVEGQEELNLE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=526594 I6J17_RS02685 WP_029141540.1 519299..520366(-) (recA) [Heyndrickxia coagulans strain FDAARGOS_1160]
GTGAATGATCGTCAACAAGCCTTAGACCAGGCTCTGAAACAAATAGAAAAGCAATTTGGCAAGGGCTCCATTATGCGGCT
GGGCGAGCAGACCGACCGGGTTGTCTCCACGATCCCGACCGGTTCGCTTGCGCTTGATATTGCCCTTGGTGTCGGCGGCT
ACCCGCGCGGCCGCGTCATTGAAATATATGGCCCTGAAAGTTCCGGTAAAACAACGGTTGCCCTGCATGCGATTGCGGAA
GTCCAGGCACAGGGCGGACAGGCTGCCTTTATTGATGCGGAACACGCACTTGACCCGGTTTATGCCCAAAAGCTCGGTGT
CAACATTGATGAACTGCTCCTGTCCCAGCCGGATACGGGCGAACAGGCGCTGGAAATTGCAGAAGCGCTCGTCCGCAGCG
GCGCAGTGGACATTGTTGTCATTGACTCCGTTGCTGCGCTTGTGCCGAGAGCGGAAATTGAAGGGGAAATGGGCGATTCC
CATGTCGGCCTCCAGGCACGGCTGATGTCCCAGGCGCTGCGGAAATTATCGGGTGCGATCAACAAATCAAACACGATTGC
GATTTTCATTAACCAAATCCGGGAAAAAGTCGGCGTGATGTTCGGCAATCCTGAAGTCACACCGGGCGGACGCGCGCTCA
AGTTTTACTCGTCCGTACGCCTTGAAGTGCGCCGTGCCGAACAGATCAAACAAGGGAGCGACATTGTCGGCAACAAAACG
AAAATCAAGGTTGTCAAAAACAAAGTAGCGCCTCCGTTTAAAACGGCAGAAGTGGATATTATGTACGGCGAAGGGATCTC
AAAAGAAGGCGAGATCGTCGATATGGGAAGCGACCTTGACATCATCCAAAAAAGCGGGGCCTGGTATGCTTATAACGGCG
AGCGGCTCGGCCAGGGGCGTGAAAATGCGAAACAGTTTTTAAAGGAAAATGCGGATTTGAAAAACGAGATTGCCGCAAAA
ATCCGGGAACATTATGACCTGGCGGAAGATGCCGGTTCCCATGAAACCGAAAATGCTGCAGATGAAAAGGAAGCTGTGGA
AGGACAGGAAGAATTGAATTTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4BQF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

92.113

0.797
  recA Latilactobacillus sakei subsp. sakei 23K

75.61

92.394

0.699
  recA Streptococcus pneumoniae D39

67.036

100

0.682
  recA Streptococcus pneumoniae Rx1

67.036

100

0.682
  recA Streptococcus pneumoniae R6

67.036

100

0.682
  recA Streptococcus pneumoniae TIGR4

67.036

100

0.682
  recA Streptococcus mitis SK321

66.76

100

0.673
  recA Streptococcus mitis NCTC 12261

66.76

100

0.673
  recA Streptococcus mutans UA159

66.201

100

0.668
  recA Streptococcus pyogenes NZ131

70.732

92.394

0.654
  recA Lactococcus lactis subsp. cremoris KW2

67.868

93.803

0.637
  recA Neisseria gonorrhoeae MS11

63.478

97.183

0.617
  recA Neisseria gonorrhoeae MS11

63.478

97.183

0.617
  recA Neisseria gonorrhoeae strain FA1090

63.478

97.183

0.617
  recA Vibrio cholerae strain A1552

63.557

96.62

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.557

96.62

0.614
  recA Ralstonia pseudosolanacearum GMI1000

68.387

87.324

0.597
  recA Acinetobacter baumannii D1279779

61.696

96.338

0.594
  recA Acinetobacter baylyi ADP1

60.519

97.746

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

92.394

0.583
  recA Pseudomonas stutzeri DSM 10701

60.35

96.62

0.583
  recA Helicobacter pylori 26695

63.665

90.704

0.577
  recA Helicobacter pylori strain NCTC11637

63.665

90.704

0.577
  recA Glaesserella parasuis strain SC1401

59.824

96.056

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.733

90.704

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.423

0.555