Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JKJ11_RS02000 Genome accession   NZ_CP068024
Coordinates   378975..380012 (+) Length   345 a.a.
NCBI ID   WP_006073329.1    Uniprot ID   A0A084T623
Organism   Vibrio sp. SCSIO 43133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 373975..385012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS01980 (JKJ11_01980) rraB 374103..374519 (+) 417 WP_038228909.1 ribonuclease E inhibitor RraB -
  JKJ11_RS01985 (JKJ11_01985) - 374640..375440 (+) 801 WP_252038680.1 hypothetical protein -
  JKJ11_RS01990 (JKJ11_01990) mutS 375580..378141 (-) 2562 WP_252038681.1 DNA mismatch repair protein MutS -
  JKJ11_RS01995 (JKJ11_01995) pncC 378277..378777 (+) 501 WP_006073327.1 nicotinamide-nucleotide amidase -
  JKJ11_RS02000 (JKJ11_02000) recA 378975..380012 (+) 1038 WP_006073329.1 recombinase RecA Machinery gene
  JKJ11_RS02005 (JKJ11_02005) recX 380088..380552 (+) 465 WP_038228916.1 recombination regulator RecX -
  JKJ11_RS02010 (JKJ11_02010) alaS 380700..383285 (+) 2586 WP_124940572.1 alanine--tRNA ligase -
  JKJ11_RS02015 (JKJ11_02015) - 383503..384690 (+) 1188 WP_252038682.1 aspartate kinase -
  JKJ11_RS02020 (JKJ11_02020) csrA 384783..384980 (+) 198 WP_004415691.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37142.63 Da        Isoelectric Point: 5.1697

>NTDB_id=526322 JKJ11_RS02000 WP_006073329.1 378975..380012(+) (recA) [Vibrio sp. SCSIO 43133]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLECIA
AAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNRYGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACKFLRENPEAAQTIDA
KLREMLLTPALEEAPEQGEAPAEEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=526322 JKJ11_RS02000 WP_006073329.1 378975..380012(+) (recA) [Vibrio sp. SCSIO 43133]
ATGGACGAGAATAAACAAAAGGCGTTAGCCGCTGCATTAGGTCAGATTGAAAAGCAATTTGGTAAAGGCTCGATTATGCG
CCTTGGTGATAACCGCACCATGGACGTTGAAACCATTTCAACAGGTTCACTTTCTCTAGATATCGCTCTAGGTGCTGGTG
GTCTTCCTATGGGTCGTATCGTAGAAATCTACGGTCCTGAATCATCAGGTAAAACAACGTTAACGCTAGAGTGTATTGCC
GCGGCACAGAAGCAAGGTAAAACATGTGCGTTTATCGATGCAGAACATGCCCTAGACCCAATCTACGCGAAGAAGCTTGG
TGTTGATATTGATTCGTTACTTGTCTCTCAACCAGATACAGGTGAGCAAGCTCTAGAAATTTGTGATGCACTAGCACGCT
CTGGTGCTATTGACGTGATGGTAGTCGACTCTGTTGCGGCTCTAACGCCAAAAGCAGAGATTGAAGGTGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCGCGTATGCTTTCTCAAGCGATGCGCAAGCTAACTGGTAACCTTAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACGACAACAGGTGGTAACGCAC
TTAAGTTCTACGCGTCTGTTCGTCTTGATATTCGTCGTACTGGTTCTATCAAAGAAGGTGACGAGGTTGTTGGTAACGAA
ACTCGCATCAAAGTTGTTAAGAACAAGATTGCAGCACCATTTAAACAAGCTGAGACTCAAATTCTATACGGCCAAGGTTT
CAACCGTTATGGCGAGCTTATTGACCTAGGCGTTAAGCATAAGCTTGTTGAAAAAGCGGGTGCATGGTACAGCTACAACG
GCGATAAGATTGGTCAAGGTAAAGCGAACGCATGTAAATTCCTTCGCGAAAACCCAGAAGCGGCACAAACGATTGATGCG
AAGCTTCGTGAAATGCTACTAACACCAGCACTGGAAGAAGCTCCAGAGCAAGGTGAAGCGCCAGCTGAAGAGTTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084T623

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

92.401

95.362

0.881
  recA Vibrio cholerae O1 biovar El Tor strain E7946

92.401

95.362

0.881
  recA Acinetobacter baylyi ADP1

72.595

99.42

0.722
  recA Pseudomonas stutzeri DSM 10701

75.61

95.072

0.719
  recA Acinetobacter baumannii D1279779

75

95.072

0.713
  recA Neisseria gonorrhoeae MS11

67.335

100

0.681
  recA Neisseria gonorrhoeae MS11

67.335

100

0.681
  recA Neisseria gonorrhoeae strain FA1090

67.335

100

0.681
  recA Glaesserella parasuis strain SC1401

70.37

93.913

0.661
  recA Ralstonia pseudosolanacearum GMI1000

72.063

91.304

0.658
  recA Helicobacter pylori 26695

59.827

100

0.6
  recA Helicobacter pylori strain NCTC11637

59.538

100

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.263

92.464

0.594
  recA Streptococcus pneumoniae R6

60.237

97.681

0.588
  recA Streptococcus pneumoniae Rx1

60.237

97.681

0.588
  recA Streptococcus pneumoniae D39

60.237

97.681

0.588
  recA Streptococcus pneumoniae TIGR4

60.237

97.681

0.588
  recA Streptococcus mitis SK321

60.119

97.391

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

93.043

0.583
  recA Streptococcus mutans UA159

61.538

94.203

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

95.942

0.577
  recA Streptococcus mitis NCTC 12261

61.3

93.623

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.145

91.884

0.571
  recA Streptococcus pyogenes NZ131

60.615

94.203

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

93.043

0.562
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.623

0.557