Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JJL53_RS02295 Genome accession   NZ_CP067417
Coordinates   489503..490564 (+) Length   353 a.a.
NCBI ID   WP_005324574.1    Uniprot ID   A0A0K0MJA3
Organism   Aeromonas media strain E31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 491366..492703 489503..490564 flank 802


Gene organization within MGE regions


Location: 489503..492703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJL53_RS02295 (JJL53_02295) recA 489503..490564 (+) 1062 WP_005324574.1 recombinase RecA Machinery gene
  JJL53_RS02300 (JJL53_02300) - 490605..491105 (+) 501 WP_005324576.1 regulatory protein RecX -
  JJL53_RS02305 (JJL53_02305) - 491366..492703 (+) 1338 WP_004575061.1 IS4-like element ISAeme15 family transposase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37944.71 Da        Isoelectric Point: 4.9743

>NTDB_id=526010 JJL53_RS02295 WP_005324574.1 489503..490564(+) (recA) [Aeromonas media strain E31]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFAENKVMAAEVEA
RLRELLLSGAVPVEKPVAAVAEEFEDESEQEFE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=526010 JJL53_RS02295 WP_005324574.1 489503..490564(+) (recA) [Aeromonas media strain E31]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGCCAGATCGAAAAGCAGTTTGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCCACCGGCTCCCTTTCCCTGGACGTGGCGCTGGGCATCGGTG
GTCTGCCGTGCGGTCGCATCGTCGAGATCTACGGTCCGGAATCGTCAGGCAAAACCACCCTCACCCTGCAGGTGATCGCG
GAAGCCCAGAAGAAAGGCAAGACCTGTGCCTTCGTCGATGCGGAGCACGCGCTGGATCCCATCTATGCCGCCAAACTGGG
GGTCAACGTCGACGACCTGCTGATCTCCCAGCCGGATACCGGTGAACAGGCGCTGGAGATCTGCGACATGCTGGTGCGCT
CCAACGCTGTTGACGTCATCATCGTCGACTCGGTGGCAGCCCTGACGCCGAAAGCGGAAATCGAAGGCGAGATGGGGGAT
TCCCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCCCTGCGCAAGCTGACCGCCAACATCAAGAACGCCAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAGCCCCGAGACCACCACGGGTGGTAACGCGC
TCAAGTTCTACGCCTCCGTGCGTCTGGATATCCGTCGCATCGGTGCCATCAAGGAAGGTGACGAAGTGGTCGGTAACGAG
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCCCCGCCCTTCAAGCAGGCCGAGTTCCAGATCTTCTACGGTGCCGGCAT
CTCCAAAGAGGGCGAACTGGTGGACTTGGGCGTCAAGCACAAGCTGATCGACAAGGCCGGCGCCTGGTACAGCTACAACG
GCGAGAAGATCGGCCAGGGCAAGGCCAACGTGATGAAGTTGTTCGCCGAGAACAAGGTGATGGCTGCCGAGGTGGAAGCC
CGCCTGCGTGAGCTGCTGCTCTCCGGTGCCGTACCGGTCGAGAAGCCGGTGGCCGCGGTCGCCGAAGAGTTTGAAGACGA
AAGCGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K0MJA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.171

96.034

0.751
  recA Vibrio cholerae strain A1552

78.659

92.918

0.731
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.659

92.918

0.731
  recA Acinetobacter baumannii D1279779

73.669

95.751

0.705
  recA Glaesserella parasuis strain SC1401

71.06

98.867

0.703
  recA Acinetobacter baylyi ADP1

73.939

93.484

0.691
  recA Ralstonia pseudosolanacearum GMI1000

72.289

94.051

0.68
  recA Neisseria gonorrhoeae MS11

71.779

92.351

0.663
  recA Neisseria gonorrhoeae MS11

71.779

92.351

0.663
  recA Neisseria gonorrhoeae strain FA1090

71.779

92.351

0.663
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

93.768

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.517

90.368

0.592
  recA Helicobacter pylori strain NCTC11637

63.692

92.068

0.586
  recA Helicobacter pylori 26695

63.077

92.068

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.935

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

60.909

93.484

0.569
  recA Streptococcus pneumoniae TIGR4

61.61

91.501

0.564
  recA Streptococcus pneumoniae Rx1

61.61

91.501

0.564
  recA Streptococcus pneumoniae D39

61.61

91.501

0.564
  recA Streptococcus pneumoniae R6

61.61

91.501

0.564
  recA Streptococcus mitis SK321

61.61

91.501

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.366

92.918

0.561
  recA Streptococcus mitis NCTC 12261

61.3

91.501

0.561
  recA Streptococcus mutans UA159

60.372

91.501

0.552
  recA Streptococcus pyogenes NZ131

60.062

91.501

0.55
  recA Lactococcus lactis subsp. cremoris KW2

57.895

91.501

0.53