Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JHW41_RS09605 Genome accession   NZ_CP067396
Coordinates   2303181..2304206 (+) Length   341 a.a.
NCBI ID   WP_057948120.1    Uniprot ID   A0A0S2DIU4
Organism   Lysobacter enzymogenes strain CX06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2298181..2309206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW41_RS09585 (JHW41_09530) - 2300366..2300890 (+) 525 WP_057948124.1 CinA family protein -
  JHW41_RS09590 (JHW41_09535) - 2301187..2302128 (-) 942 WP_250449748.1 helix-turn-helix domain-containing GNAT family N-acetyltransferase -
  JHW41_RS09595 (JHW41_09540) lexA 2302249..2302911 (+) 663 WP_057948122.1 transcriptional repressor LexA -
  JHW41_RS09600 (JHW41_09545) - 2302908..2303144 (+) 237 WP_057948121.1 hypothetical protein -
  JHW41_RS09605 (JHW41_09550) recA 2303181..2304206 (+) 1026 WP_057948120.1 recombinase RecA Machinery gene
  JHW41_RS09610 recX 2304692..2305192 (+) 501 WP_057950167.1 recombination regulator RecX -
  JHW41_RS09615 (JHW41_09560) alaS 2305358..2307991 (+) 2634 WP_250449749.1 alanine--tRNA ligase -
  JHW41_RS09620 (JHW41_09565) csrA 2308136..2308339 (+) 204 WP_057948118.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36740.35 Da        Isoelectric Point: 5.1984

>NTDB_id=525871 JHW41_RS09605 WP_057948120.1 2303181..2304206(+) (recA) [Lysobacter enzymogenes strain CX06]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRAVEAAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPIYAAKLGVNIDDLLVSQPDTGEQALEIADMLVRSAAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNVLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKMAPPFKQIVTEILYGEGISREGELIDMGVEAKLVEKSGAWYSCDGERIGQGKENARQYLKENPEMAQRL
EANLREKFVPAEASREEAAED

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=525871 JHW41_RS09605 WP_057948120.1 2303181..2304206(+) (recA) [Lysobacter enzymogenes strain CX06]
ATGGACGAGAACAAGAAGCGCGCGCTTGCGGCCGCCCTGGGCCAGATCGAGAAGCAATTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGCGGTCGAAGCCGCCGAGGTCATCGGCACCGGCTCGCTGATGCTCGACATCGCGCTCGGCATCGGCG
GTCTGCCCAAGGGCCGCGTGGTCGAAATCTACGGCCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGGCCATCGCC
CAGTGCCAGAAGAACGGCGGCACCGCCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGATCTACGCCGCCAAGCTCGG
CGTCAACATCGACGACCTGCTGGTCTCGCAGCCCGATACCGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CGGCCGCGGTCGACATGGTCGTGGTCGACTCGGTCGCCGCGCTGACGCCGAAGGCCGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCGGGCCTGCAGGCCCGCCTGATGTCGCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAACGTGCT
GGTGATCTTCATCAATCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGCGGCA
ACGCGTTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGATCGTCACCGAGATCCTCTACGGCGA
AGGCATCTCGCGCGAAGGCGAACTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGTCGGGCGCCTGGTACAGCT
GCGACGGCGAGCGCATCGGACAGGGCAAGGAAAACGCCCGCCAGTACCTCAAGGAAAACCCCGAAATGGCCCAGCGCCTG
GAAGCCAACCTGCGCGAGAAGTTCGTGCCGGCCGAGGCTTCGCGCGAAGAGGCCGCCGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S2DIU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

72.434

100

0.724
  recA Pseudomonas stutzeri DSM 10701

73.952

97.947

0.724
  recA Vibrio cholerae strain A1552

71.098

100

0.721
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.098

100

0.721
  recA Acinetobacter baumannii D1279779

73.252

96.481

0.707
  recA Ralstonia pseudosolanacearum GMI1000

75.399

91.789

0.692
  recA Neisseria gonorrhoeae MS11

69.632

95.601

0.666
  recA Neisseria gonorrhoeae MS11

69.632

95.601

0.666
  recA Neisseria gonorrhoeae strain FA1090

69.632

95.601

0.666
  recA Glaesserella parasuis strain SC1401

69.659

94.721

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.25

93.842

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.363

97.654

0.619
  recA Bacillus subtilis subsp. subtilis str. 168

63.385

95.308

0.604
  recA Helicobacter pylori strain NCTC11637

63.19

95.601

0.604
  recA Streptococcus mitis NCTC 12261

59.249

100

0.601
  recA Helicobacter pylori 26695

62.883

95.601

0.601
  recA Streptococcus mitis SK321

58.96

100

0.598
  recA Streptococcus pneumoniae Rx1

61.89

96.188

0.595
  recA Streptococcus pneumoniae D39

61.89

96.188

0.595
  recA Streptococcus pneumoniae R6

61.89

96.188

0.595
  recA Streptococcus pneumoniae TIGR4

61.89

96.188

0.595
  recA Latilactobacillus sakei subsp. sakei 23K

60.18

97.947

0.589
  recA Streptococcus mutans UA159

60.909

96.774

0.589
  recA Streptococcus pyogenes NZ131

60.606

96.774

0.587
  recA Lactococcus lactis subsp. cremoris KW2

60.308

95.308

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.561

93.548

0.557