Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JHW38_RS06985 Genome accession   NZ_CP067395
Coordinates   1705553..1706581 (-) Length   342 a.a.
NCBI ID   WP_207525252.1    Uniprot ID   -
Organism   Lysobacter enzymogenes strain CX03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1700553..1711581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW38_RS06970 (JHW38_06970) csrA 1701439..1701642 (-) 204 WP_057948118.1 carbon storage regulator CsrA -
  JHW38_RS06975 (JHW38_06975) alaS 1701787..1704420 (-) 2634 WP_207525251.1 alanine--tRNA ligase -
  JHW38_RS25435 recX 1704586..1705086 (-) 501 WP_242691369.1 recombination regulator RecX -
  JHW38_RS06985 (JHW38_06985) recA 1705553..1706581 (-) 1029 WP_207525252.1 recombinase RecA Machinery gene
  JHW38_RS06990 (JHW38_06990) - 1706618..1706842 (-) 225 WP_207525253.1 hypothetical protein -
  JHW38_RS06995 (JHW38_06995) lexA 1706851..1707507 (-) 657 WP_207525254.1 transcriptional repressor LexA -
  JHW38_RS07000 (JHW38_07000) - 1707623..1708564 (+) 942 WP_207525255.1 helix-turn-helix domain-containing GNAT family N-acetyltransferase -
  JHW38_RS07005 (JHW38_07005) - 1708741..1709265 (-) 525 WP_207525256.1 CinA family protein -
  JHW38_RS07010 (JHW38_07010) - 1709368..1710417 (-) 1050 WP_207525257.1 PD40 domain-containing protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36813.40 Da        Isoelectric Point: 5.1945

>NTDB_id=525843 JHW38_RS06985 WP_207525252.1 1705553..1706581(-) (recA) [Lysobacter enzymogenes strain CX03]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRAVEAAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPIYAAKLGVNIDDLLVSQPDTGEQALEIADMLVRSAAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNVLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKMAPPFKQIVTEILYGEGISREGELIDMGVEAKLVEKSGAWYSCDGERIGQGKENARQYLKENPEMAQRL
EANLREKFVPAEASRDEAASDE

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=525843 JHW38_RS06985 WP_207525252.1 1705553..1706581(-) (recA) [Lysobacter enzymogenes strain CX03]
ATGGACGAGAACAAGAAGCGCGCGCTTGCGGCCGCCCTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGTTCGGTGATGCG
CATGGGCGACCGCGCGGTCGAAGCCGCCGAAGTGATCGGCACCGGCTCGCTGATGCTCGACATCGCGCTCGGCATCGGCG
GCCTGCCCAAGGGCCGCGTGGTCGAGATCTACGGCCCGGAATCCTCGGGCAAGACCACCCTGACGCTGCAGGCCATCGCC
CAGTGCCAGAAGAACGGCGGCACCGCCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGATCTACGCCGCCAAGCTCGG
CGTCAACATCGACGACCTGCTGGTCTCGCAGCCCGACACCGGCGAGCAGGCCCTGGAAATCGCCGACATGCTGGTGCGTT
CGGCCGCGGTCGACATGGTCGTGGTCGACTCGGTCGCCGCGCTGACCCCGAAGGCCGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCGGGCCTGCAGGCCCGCCTGATGTCGCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAACGTGCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGCGGCA
ACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGATGGCGCCCCCGTTCAAGCAGATCGTCACCGAAATCCTCTACGGCGA
AGGCATTTCGCGCGAGGGCGAGCTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGTCGGGCGCCTGGTACAGCT
GCGACGGCGAGCGCATCGGCCAGGGCAAGGAGAACGCCCGCCAATACCTCAAGGAAAACCCCGAAATGGCCCAGCGCCTG
GAAGCCAACCTGCGCGAGAAGTTCGTGCCGGCCGAGGCTTCGCGCGACGAGGCCGCCAGCGACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

72.515

100

0.725
  recA Pseudomonas stutzeri DSM 10701

73.952

97.661

0.722
  recA Vibrio cholerae strain A1552

72.892

97.076

0.708
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.892

97.076

0.708
  recA Acinetobacter baumannii D1279779

73.252

96.199

0.705
  recA Ralstonia pseudosolanacearum GMI1000

75.399

91.52

0.69
  recA Neisseria gonorrhoeae MS11

69.632

95.322

0.664
  recA Neisseria gonorrhoeae MS11

69.632

95.322

0.664
  recA Neisseria gonorrhoeae strain FA1090

69.632

95.322

0.664
  recA Glaesserella parasuis strain SC1401

69.659

94.444

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.25

93.567

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.363

97.368

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

63.385

95.029

0.602
  recA Streptococcus mitis NCTC 12261

59.71

100

0.602
  recA Helicobacter pylori strain NCTC11637

63.19

95.322

0.602
  recA Streptococcus mitis SK321

59.42

100

0.599
  recA Helicobacter pylori 26695

62.883

95.322

0.599
  recA Streptococcus pneumoniae Rx1

61.89

95.906

0.594
  recA Streptococcus pneumoniae D39

61.89

95.906

0.594
  recA Streptococcus pneumoniae R6

61.89

95.906

0.594
  recA Streptococcus pneumoniae TIGR4

61.89

95.906

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

60.18

97.661

0.588
  recA Streptococcus mutans UA159

60.909

96.491

0.588
  recA Streptococcus pyogenes NZ131

60.606

96.491

0.585
  recA Lactococcus lactis subsp. cremoris KW2

60.308

95.029

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.561

93.275

0.556