Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JHE06_RS03435 Genome accession   NZ_CP067364
Coordinates   706966..708048 (+) Length   360 a.a.
NCBI ID   WP_058920137.1    Uniprot ID   A0A0U3NTV1
Organism   Carnobacterium sp. CS13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 701966..713048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHE06_RS03415 (JHE06_03415) - 702914..703639 (+) 726 WP_058920133.1 SDR family oxidoreductase -
  JHE06_RS03420 (JHE06_03420) - 703791..704663 (+) 873 WP_201089484.1 RodZ domain-containing protein -
  JHE06_RS03425 (JHE06_03425) pgsA 704770..705351 (+) 582 WP_058920135.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JHE06_RS03430 (JHE06_03430) - 705538..706812 (+) 1275 WP_058920136.1 competence/damage-inducible protein A -
  JHE06_RS03435 (JHE06_03435) recA 706966..708048 (+) 1083 WP_058920137.1 recombinase RecA Machinery gene
  JHE06_RS03440 (JHE06_03440) rny 708361..709920 (+) 1560 WP_058920138.1 ribonuclease Y -
  JHE06_RS03445 (JHE06_03445) - 710076..710879 (+) 804 WP_058920139.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38694.34 Da        Isoelectric Point: 5.2534

>NTDB_id=525612 JHE06_RS03435 WP_058920137.1 706966..708048(+) (recA) [Carnobacterium sp. CS13]
MAEDRKQALDAALKKIEKNFGKGSVMKLGEKIDTRISTVPSGSLALDVALGVGGFPRGRIIEVYGPESSGKTTVALHAVA
EVQKQGGIAAFIDAENALDPKYAAALGVDIDELLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRALKFYATVRLEVRRAEQIKQGTDIMGNR
TKIKVVKNKVAPPFRVAEVDIMYGEGISQVGELVDMGSEKDIIDKSGAWYSYEGERIGQGRENAKKYFIDHPELRAEIEE
KVRAAYGIGDAPAEPVESAKPEEIKEAKATVKKKIAPEEI

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=525612 JHE06_RS03435 WP_058920137.1 706966..708048(+) (recA) [Carnobacterium sp. CS13]
ATGGCAGAAGACCGTAAACAAGCATTAGATGCAGCATTGAAAAAGATTGAAAAAAACTTTGGTAAAGGTTCCGTAATGAA
ACTAGGGGAAAAAATCGATACCCGTATTTCTACTGTTCCAAGTGGCTCTTTAGCACTGGATGTTGCATTAGGAGTGGGCG
GTTTCCCAAGAGGCCGAATCATTGAAGTTTATGGACCAGAAAGTTCTGGTAAAACTACAGTAGCACTGCACGCTGTGGCA
GAAGTTCAAAAACAAGGCGGAATTGCCGCTTTTATTGATGCAGAAAATGCTCTAGATCCTAAATATGCTGCGGCATTAGG
AGTAGACATTGATGAATTGCTTTTATCACAACCCGATACCGGTGAACAAGGACTAGAAATTGCTGATGCATTAGTATCAA
GTGGAGCAGTTGACATCGTTGTAATTGACTCAGTAGCTGCTTTAGTACCGCGTGCAGAAATTGAAGGCGAAATGGGGGAC
AGTCATGTAGGGCTGCAAGCTCGTTTGATGTCTCAAGCTTTGCGTAAATTATCCGGTTCAATCAATAAAACAAAAACCAT
TGCGCTATTCATCAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCGGAAATTACTCCTGGTGGACGTGCTC
TAAAATTCTATGCAACAGTTCGTTTAGAAGTAAGACGTGCAGAACAAATTAAACAAGGCACGGATATTATGGGAAACCGT
ACAAAAATCAAGGTCGTAAAAAACAAAGTAGCGCCGCCTTTCAGAGTGGCTGAAGTGGATATTATGTACGGAGAAGGGAT
TTCACAAGTCGGCGAGTTAGTAGATATGGGGTCAGAAAAAGACATCATTGATAAGTCGGGTGCTTGGTATTCTTATGAAG
GCGAACGTATTGGTCAAGGACGCGAAAATGCTAAAAAATACTTTATAGACCATCCTGAATTACGAGCTGAAATCGAAGAA
AAAGTTCGAGCAGCTTATGGTATTGGAGATGCACCAGCAGAGCCTGTTGAATCTGCTAAACCAGAAGAAATAAAAGAAGC
AAAAGCAACTGTTAAAAAGAAAATTGCACCAGAAGAGATATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3NTV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.925

96.111

0.778
  recA Bacillus subtilis subsp. subtilis str. 168

79.692

90.278

0.719
  recA Streptococcus mitis SK321

70.554

95.278

0.672
  recA Streptococcus mutans UA159

68.661

97.5

0.669
  recA Streptococcus mitis NCTC 12261

70.262

95.278

0.669
  recA Streptococcus pyogenes NZ131

72.508

91.944

0.667
  recA Streptococcus pneumoniae Rx1

71.299

91.944

0.656
  recA Streptococcus pneumoniae D39

71.299

91.944

0.656
  recA Streptococcus pneumoniae R6

71.299

91.944

0.656
  recA Streptococcus pneumoniae TIGR4

71.299

91.944

0.656
  recA Lactococcus lactis subsp. cremoris KW2

69.486

91.944

0.639
  recA Neisseria gonorrhoeae strain FA1090

60.92

96.667

0.589
  recA Neisseria gonorrhoeae MS11

60.92

96.667

0.589
  recA Neisseria gonorrhoeae MS11

60.92

96.667

0.589
  recA Ralstonia pseudosolanacearum GMI1000

65.176

86.944

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

90.833

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.606

91.667

0.556
  recA Glaesserella parasuis strain SC1401

62.305

89.167

0.556
  recA Acinetobacter baumannii D1279779

61.61

89.722

0.553
  recA Helicobacter pylori strain NCTC11637

58.235

94.444

0.55
  recA Helicobacter pylori 26695

58.235

94.444

0.55
  recA Acinetobacter baylyi ADP1

60.991

89.722

0.547
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.574

91.389

0.544
  recA Pseudomonas stutzeri DSM 10701

60.185

90

0.542
  recA Vibrio cholerae strain A1552

60.062

89.722

0.539
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.062

89.722

0.539