Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JJC02_RS06285 Genome accession   NZ_CP067346
Coordinates   1293124..1294170 (+) Length   348 a.a.
NCBI ID   WP_227857683.1    Uniprot ID   -
Organism   Clostridioides sp. ES-S-0054-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1288124..1299170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJC02_RS06270 (JJC02_06280) mnmH 1289921..1290979 (+) 1059 WP_227451572.1 tRNA 2-selenouridine(34) synthase MnmH -
  JJC02_RS06275 (JJC02_06285) rimO 1290973..1292307 (+) 1335 WP_227857681.1 30S ribosomal protein S12 methylthiotransferase RimO -
  JJC02_RS06280 (JJC02_06290) pgsA 1292294..1292836 (+) 543 WP_227857682.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JJC02_RS06285 (JJC02_06295) recA 1293124..1294170 (+) 1047 WP_227857683.1 recombinase RecA Machinery gene
  JJC02_RS06290 (JJC02_06300) rny 1294346..1295887 (+) 1542 WP_227451567.1 ribonuclease Y -
  JJC02_RS06295 (JJC02_06305) - 1296199..1298379 (+) 2181 WP_227857684.1 diguanylate cyclase -
  JJC02_RS06300 (JJC02_06310) - 1298494..1298631 (-) 138 WP_236124809.1 hypothetical protein -
  JJC02_RS18205 - 1298623..1298703 (-) 81 Protein_1155 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37421.78 Da        Isoelectric Point: 4.8251

>NTDB_id=525553 JJC02_RS06285 WP_227857683.1 1293124..1294170(+) (recA) [Clostridioides sp. ES-S-0054-01]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRVFYNLNEEREESGTSVAKEIVEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=525553 JJC02_RS06285 WP_227857683.1 1293124..1294170(+) (recA) [Clostridioides sp. ES-S-0054-01]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCAATTGGTTTGGATATAGCTATTGGTA
TAGGTGGTTTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
CTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAGCAGGCTTTAGAAATAGCAGAGGCATTAA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAAGCTGAAATAGATGGAGATATG
GGTGACTCTCATGTAGGTTTACAAGCTAGACTTATGTCTCAAGCACTTAGAAAATTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAATCCAGAAACTACTACTGGAGGAC
GTGCACTAAAGTTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGA
AGTAGAACGAGAGTCAAAGTTGTTAAAAATAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
GGGTATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCGTGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTGGATTTAACTAATGAAATA
GACGAGAAAGTAAGAGTATTTTACAATTTAAATGAAGAACGTGAAGAATCGGGTACTTCAGTAGCAAAAGAAATTGTAGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

67.049

100

0.672
  recA Streptococcus mitis NCTC 12261

66.474

99.425

0.661
  recA Streptococcus mitis SK321

67.751

97.126

0.658
  recA Bacillus subtilis subsp. subtilis str. 168

69.565

92.529

0.644
  recA Streptococcus pneumoniae Rx1

67.173

94.54

0.635
  recA Streptococcus pneumoniae TIGR4

67.173

94.54

0.635
  recA Streptococcus pneumoniae R6

67.173

94.54

0.635
  recA Streptococcus pneumoniae D39

67.173

94.54

0.635
  recA Streptococcus pyogenes NZ131

67.278

93.966

0.632
  recA Lactococcus lactis subsp. cremoris KW2

65.269

95.977

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.758

94.828

0.624
  recA Latilactobacillus sakei subsp. sakei 23K

64.653

95.115

0.615
  recA Acinetobacter baumannii D1279779

61.272

99.425

0.609
  recA Neisseria gonorrhoeae MS11

66.667

89.655

0.598
  recA Neisseria gonorrhoeae MS11

66.667

89.655

0.598
  recA Neisseria gonorrhoeae strain FA1090

66.667

89.655

0.598
  recA Acinetobacter baylyi ADP1

64.087

92.816

0.595
  recA Helicobacter pylori strain NCTC11637

61.976

95.977

0.595
  recA Helicobacter pylori 26695

61.976

95.977

0.595
  recA Pseudomonas stutzeri DSM 10701

63.777

92.816

0.592
  recA Glaesserella parasuis strain SC1401

64.174

92.241

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.272

93.103

0.589
  recA Ralstonia pseudosolanacearum GMI1000

66.558

88.506

0.589
  recA Vibrio cholerae strain A1552

62.848

92.816

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

92.816

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

92.241

0.56