Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JGR78_RS16240 Genome accession   NZ_CP067225
Coordinates   3282605..3283675 (+) Length   356 a.a.
NCBI ID   WP_182790878.1    Uniprot ID   A0A7W4GQC6
Organism   Paracoccus sp. MC1862     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3277605..3288675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGR78_RS16230 (JGR78_16230) - 3279077..3281179 (-) 2103 WP_182790880.1 PAS domain-containing sensor histidine kinase -
  JGR78_RS16235 (JGR78_16235) - 3281204..3282349 (-) 1146 WP_182790879.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  JGR78_RS16240 (JGR78_16240) recA 3282605..3283675 (+) 1071 WP_182790878.1 recombinase RecA Machinery gene
  JGR78_RS16245 (JGR78_16245) alaS 3283814..3286471 (+) 2658 WP_182790877.1 alanine--tRNA ligase -
  JGR78_RS16250 (JGR78_16250) - 3286586..3287380 (+) 795 WP_182790876.1 class II glutamine amidotransferase -
  JGR78_RS16255 (JGR78_16255) aroC 3287402..3288502 (-) 1101 WP_182790875.1 chorismate synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38209.59 Da        Isoelectric Point: 5.0683

>NTDB_id=525167 JGR78_RS16240 WP_182790878.1 3282605..3283675(+) (recA) [Paracoccus sp. MC1862]
MSGASILKMDDKRSADRQKALDSALAQIERQFGKGSIMKLGADNPVAEIESTSTGSLGLDIALGIGGLPKGRIIEIFGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPLYARKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVSLVVIDSVAA
LTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT
GSIKDRDEVVGNSTKVKVVKNKVAPPFKQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWYSHGDERIGQGRENAKQF
LRDNPQVALAIEDRIRASHGLEFTATEDGDDALTEE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=525167 JGR78_RS16240 WP_182790878.1 3282605..3283675(+) (recA) [Paracoccus sp. MC1862]
ATGTCTGGGGCGAGCATCCTGAAGATGGACGACAAACGCAGCGCGGACCGGCAGAAGGCGCTCGACAGCGCCCTTGCGCA
GATCGAACGCCAGTTCGGCAAGGGCTCGATCATGAAGCTCGGCGCGGACAATCCGGTGGCCGAGATCGAGTCGACCTCGA
CCGGCTCGCTGGGGCTGGACATCGCGCTGGGGATTGGCGGCCTGCCCAAGGGCCGCATCATCGAAATCTTCGGGCCGGAA
AGCTCGGGGAAGACCACGCTGACGCTGCATGTCGTGGCCGAGGAACAGAAGAAGGGCGGCGTCTGCGCCTTCGTGGACGC
GGAACACGCGCTGGACCCGCTTTACGCCCGCAAGCTGGGCGTGAACCTGGACGAGCTGCTGATCTCGCAGCCCGACACGG
GCGAGCAGGCGCTGGAGATCGTGGACACGCTGGTCCGGTCCGGCGCGGTCAGCCTGGTTGTGATCGACTCGGTCGCGGCG
CTGACGCCCAAGTCCGAGATCGAGGGTGACATGGGCGACATGCAGATGGGCAGCCAGGCCCGCCTGATGAGCCAGGCGAT
GCGGAAGCTGACCGCCTCGATTGGCCGGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGGGTCA
TGTTCGGGAACCCCGAGACGACGACGGGCGGCAATGCCCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACC
GGCTCGATCAAGGACCGCGACGAAGTGGTGGGCAACTCGACCAAGGTGAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTT
CAAGCAGGTCGAGTTCGACATCATGTATGGCGAGGGGATTTCCAAGGTCGGTGAGCTGATCGATCTGGGCGTCAAGGCCG
GCGTGGTGGAAAAGTCAGGCGCCTGGTATTCCCATGGCGACGAGCGGATCGGGCAGGGGCGCGAGAACGCCAAGCAGTTC
CTGCGCGACAACCCGCAGGTGGCGCTGGCCATCGAGGACCGAATCCGCGCCAGTCATGGGCTGGAGTTCACCGCGACCGA
GGATGGCGACGACGCGCTGACCGAGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4GQC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

73.171

92.135

0.674
  recA Glaesserella parasuis strain SC1401

67.341

97.191

0.654
  recA Neisseria gonorrhoeae MS11

68.047

94.944

0.646
  recA Neisseria gonorrhoeae MS11

68.047

94.944

0.646
  recA Neisseria gonorrhoeae strain FA1090

68.047

94.944

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.093

90.169

0.632
  recA Vibrio cholerae strain A1552

70.093

90.169

0.632
  recA Acinetobacter baumannii D1279779

68.293

92.135

0.629
  recA Pseudomonas stutzeri DSM 10701

69.565

90.449

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.826

96.629

0.626
  recA Acinetobacter baylyi ADP1

67.988

92.135

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

66.768

92.135

0.615
  recA Helicobacter pylori 26695

65.031

91.573

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.724

91.573

0.593
  recA Helicobacter pylori strain NCTC11637

64.417

91.573

0.59
  recA Streptococcus mitis SK321

62.575

93.82

0.587
  recA Streptococcus mitis NCTC 12261

62.275

93.82

0.584
  recA Streptococcus pneumoniae R6

61.976

93.82

0.581
  recA Streptococcus pneumoniae TIGR4

61.976

93.82

0.581
  recA Streptococcus pneumoniae Rx1

61.976

93.82

0.581
  recA Streptococcus pneumoniae D39

61.976

93.82

0.581
  recA Streptococcus pyogenes NZ131

61.094

92.416

0.565
  recA Streptococcus mutans UA159

60.606

92.697

0.562
  recA Lactococcus lactis subsp. cremoris KW2

59.88

93.82

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

59.459

93.539

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

91.011

0.548