Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JHX88_RS05045 Genome accession   NZ_CP067140
Coordinates   1083062..1084150 (+) Length   362 a.a.
NCBI ID   WP_076525809.1    Uniprot ID   A0AA45W4I5
Organism   Paracoccus saliphilus strain DSM 18447     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1078062..1089150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHX88_RS05030 (JHX88_05010) - 1078859..1080001 (+) 1143 WP_076525924.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  JHX88_RS05035 (JHX88_05015) - 1080092..1082209 (+) 2118 WP_076525805.1 ATP-binding protein -
  JHX88_RS05040 (JHX88_05020) - 1082234..1082821 (-) 588 WP_076525807.1 hypothetical protein -
  JHX88_RS05045 (JHX88_05025) recA 1083062..1084150 (+) 1089 WP_076525809.1 recombinase RecA Machinery gene
  JHX88_RS05050 (JHX88_05030) alaS 1084387..1087044 (+) 2658 WP_076525811.1 alanine--tRNA ligase -
  JHX88_RS05055 (JHX88_05035) - 1087041..1087340 (+) 300 WP_076525813.1 DUF1330 domain-containing protein -
  JHX88_RS05060 (JHX88_05040) - 1087381..1087800 (-) 420 WP_076525815.1 hypothetical protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38408.61 Da        Isoelectric Point: 4.9676

>NTDB_id=525149 JHX88_RS05045 WP_076525809.1 1083062..1084150(+) (recA) [Paracoccus saliphilus strain DSM 18447]
MATASILDMNDKRSADKQKALDSALAQIERQFGKGSIMKLGADNPVAEIEATSTGSLGLDIALGIGGLPKGRIIEIYGPE
SSGKTTLTLHAVAEEQKKGGVCAFVDAEHALDPLYARKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVSMVVIDSVAA
LTPKAEIEGDMGDHQVGAQARLMSQAMRKLTASIGRSNCMVVFINQIRMKIGVMFGNPETTSGGNALKFYASVRLDIRRT
GSVKDRDEVTGNTTRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWYSYGDERIGQGRENAKQY
LRDNPAAADVIEDKIRASHGLDFGPAGAGAGGSGEDEILGEE

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=525149 JHX88_RS05045 WP_076525809.1 1083062..1084150(+) (recA) [Paracoccus saliphilus strain DSM 18447]
ATGGCAACGGCGAGCATCTTGGACATGAACGACAAACGCAGCGCGGACAAGCAAAAGGCGCTGGACAGCGCACTGGCGCA
GATCGAGCGGCAATTCGGCAAGGGCTCGATCATGAAGCTGGGCGCCGACAATCCGGTGGCCGAGATCGAGGCGACCTCGA
CCGGTTCGCTTGGGCTGGACATTGCCCTGGGGATCGGCGGGCTGCCAAAAGGCCGGATCATCGAGATTTACGGCCCGGAA
AGCAGCGGCAAAACCACGTTGACCCTGCATGCGGTCGCTGAAGAGCAGAAAAAGGGAGGAGTTTGCGCTTTTGTCGATGC
CGAGCACGCGCTCGACCCGCTCTATGCCCGCAAGCTGGGCGTGAACCTGGACGAGCTGCTGATCTCGCAGCCCGATACGG
GCGAGCAGGCGCTGGAAATCGTGGATACGCTGGTGCGGTCCGGTGCGGTCAGCATGGTGGTGATCGATTCGGTCGCCGCG
CTGACCCCGAAAGCCGAGATCGAGGGCGATATGGGCGACCACCAGGTCGGCGCGCAGGCCCGTCTGATGAGCCAGGCGAT
GCGCAAGCTGACCGCCAGCATCGGCCGATCGAACTGCATGGTGGTCTTCATCAACCAGATCCGGATGAAGATCGGCGTGA
TGTTCGGCAATCCGGAAACCACCTCGGGCGGCAACGCGTTGAAATTCTACGCTTCGGTGCGCCTGGATATTCGCCGCACC
GGCTCGGTCAAGGACCGCGACGAAGTGACCGGCAACACGACACGGGTGAAGGTGGTCAAGAACAAGGTCGCGCCACCTTT
CCGACAGGTCGAGTTCGACATCATGTATGGCGAGGGAATCAGCAAGGTCGGTGAGTTGATCGACCTGGGCGTGAAGGCCG
GCGTGGTCGAGAAATCCGGGGCCTGGTATTCCTATGGAGACGAACGGATCGGGCAGGGGCGCGAGAATGCCAAGCAATAC
CTGCGCGACAACCCGGCTGCAGCCGATGTGATCGAGGACAAGATTCGCGCTAGTCACGGACTGGATTTTGGGCCCGCTGG
TGCGGGTGCCGGCGGAAGCGGTGAAGACGAGATACTCGGCGAGGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.94

92.541

0.666
  recA Neisseria gonorrhoeae MS11

70.909

91.16

0.646
  recA Neisseria gonorrhoeae strain FA1090

70.909

91.16

0.646
  recA Neisseria gonorrhoeae MS11

70.909

91.16

0.646
  recA Glaesserella parasuis strain SC1401

72.188

88.398

0.638
  recA Pseudomonas stutzeri DSM 10701

70.807

88.95

0.63
  recA Vibrio cholerae strain A1552

69.782

88.674

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.782

88.674

0.619
  recA Acinetobacter baylyi ADP1

69.159

88.674

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

67.378

90.608

0.61
  recA Acinetobacter baumannii D1279779

68.847

88.674

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.463

90.608

0.602
  recA Helicobacter pylori 26695

66.258

90.055

0.597
  recA Helicobacter pylori strain NCTC11637

66.258

90.055

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.05

94.199

0.594
  recA Streptococcus mitis NCTC 12261

61.538

93.37

0.575
  recA Streptococcus pneumoniae Rx1

61.243

93.37

0.572
  recA Streptococcus mitis SK321

61.243

93.37

0.572
  recA Streptococcus pneumoniae D39

61.243

93.37

0.572
  recA Streptococcus pneumoniae R6

61.243

93.37

0.572
  recA Streptococcus pneumoniae TIGR4

61.243

93.37

0.572
  recA Streptococcus pyogenes NZ131

60.237

93.094

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

61.212

91.16

0.558
  recA Lactococcus lactis subsp. cremoris KW2

59.763

93.37

0.558
  recA Streptococcus mutans UA159

60.606

91.16

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.568

89.503

0.533