Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JHW44_RS10395 Genome accession   NZ_CP067129
Coordinates   2123609..2124679 (-) Length   356 a.a.
NCBI ID   WP_089344550.1    Uniprot ID   -
Organism   Paracoccus seriniphilus strain DSM 14827     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2118609..2129679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW44_RS10380 (JHW44_10370) - 2120015..2120362 (+) 348 WP_089344553.1 DUF4177 domain-containing protein -
  JHW44_RS10385 (JHW44_10375) - 2120445..2120744 (-) 300 WP_089344552.1 DUF1330 domain-containing protein -
  JHW44_RS10390 (JHW44_10380) alaS 2120741..2123398 (-) 2658 WP_089344551.1 alanine--tRNA ligase -
  JHW44_RS10395 (JHW44_10385) recA 2123609..2124679 (-) 1071 WP_089344550.1 recombinase RecA Machinery gene
  JHW44_RS10400 (JHW44_10390) - 2124931..2125515 (+) 585 WP_089344549.1 sulfotransferase family 2 domain-containing protein -
  JHW44_RS10405 (JHW44_10395) - 2125536..2127665 (-) 2130 WP_245847129.1 hybrid sensor histidine kinase/response regulator -
  JHW44_RS10410 (JHW44_10400) - 2127750..2128901 (-) 1152 WP_089344547.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38302.74 Da        Isoelectric Point: 5.3369

>NTDB_id=525135 JHW44_RS10395 WP_089344550.1 2123609..2124679(-) (recA) [Paracoccus seriniphilus strain DSM 14827]
MAQASIFDMTDKRSADKQKALDSALAQIERQFGKGSIMKLGKDSPVADIEATSTGSLGLDIALGIGGLPKGRIIEIYGPE
SSGKTTLTLHAVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVNMVVVDSVAA
LTPKAEIEGDMGDHQVGAQARLMSQAMRKLTANIGRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRT
GSIKDRDEVIGNSTKVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWYSYGDERIGQGRENAKKF
LRDRPDVALAIEDKIRASHGLEFLPYGDDDDALTEV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=525135 JHW44_RS10395 WP_089344550.1 2123609..2124679(-) (recA) [Paracoccus seriniphilus strain DSM 14827]
ATGGCACAGGCGAGCATATTCGACATGACCGACAAACGCAGTGCGGACAAGCAAAAGGCCCTGGACAGTGCTTTGGCACA
GATCGAACGTCAGTTCGGCAAGGGGTCGATCATGAAGCTGGGCAAGGACAGCCCGGTTGCCGATATCGAGGCCACCTCGA
CCGGTTCGCTGGGGCTGGACATCGCGCTGGGGATTGGCGGCCTGCCCAAGGGACGGATCATCGAGATCTATGGCCCGGAA
AGCTCGGGCAAGACCACGCTGACGCTGCATGCGGTTGCCGAGGAGCAGAAGAAGGGCGGCGTATGCGCCTTTGTCGACGC
CGAACATGCGCTGGACCCGCAATATGCCAAGAAGCTGGGCGTCAATCTGGACGAACTGCTGATTTCCCAGCCCGATACGG
GTGAACAGGCGCTGGAAATCGTCGATACGCTGGTCCGCTCGGGGGCGGTCAACATGGTTGTCGTCGATTCCGTCGCCGCC
CTGACACCCAAGGCCGAGATCGAGGGCGACATGGGCGACCATCAGGTCGGTGCGCAGGCGCGCCTGATGAGCCAGGCGAT
GCGCAAGCTGACTGCGAATATCGGGCGCTCGAACTGTATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCA
TGTTCGGCAGTCCGGAAACGACTTCGGGGGGCAACGCGCTGAAATTCTATGCTTCGGTCCGGCTGGACATCCGCCGCACC
GGTTCGATCAAGGACCGCGACGAGGTGATCGGCAATTCGACCAAGGTGAAGGTGGTCAAGAACAAGGTCGCACCGCCGTT
CCGGCAGGTCGAATTCGACATCATGTATGGCGAGGGCATCAGCAAGGTCGGCGAATTGATCGATCTGGGCGTCAAGGCCG
GCGTCGTCGAGAAGTCGGGGGCCTGGTATTCCTATGGGGATGAACGGATCGGTCAGGGTCGGGAAAACGCCAAGAAATTC
CTTCGCGATCGCCCCGATGTCGCACTGGCCATCGAGGACAAGATCAGGGCCAGTCACGGGTTGGAGTTCCTGCCCTATGG
GGATGATGATGACGCTCTGACCGAAGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

73.476

92.135

0.677
  recA Neisseria gonorrhoeae MS11

70.606

92.697

0.654
  recA Neisseria gonorrhoeae MS11

70.606

92.697

0.654
  recA Neisseria gonorrhoeae strain FA1090

70.606

92.697

0.654
  recA Glaesserella parasuis strain SC1401

72.188

89.888

0.649
  recA Pseudomonas stutzeri DSM 10701

71.118

90.449

0.643
  recA Vibrio cholerae strain A1552

70.405

90.169

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.405

90.169

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.062

94.663

0.635
  recA Acinetobacter baylyi ADP1

69.782

90.169

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

67.988

92.135

0.626
  recA Helicobacter pylori 26695

66.172

94.663

0.626
  recA Helicobacter pylori strain NCTC11637

66.172

94.663

0.626
  recA Acinetobacter baumannii D1279779

69.159

90.169

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.951

91.573

0.604
  recA Streptococcus mitis SK321

61.834

94.944

0.587
  recA Streptococcus pneumoniae TIGR4

61.538

94.944

0.584
  recA Streptococcus pneumoniae D39

61.538

94.944

0.584
  recA Streptococcus pneumoniae R6

61.538

94.944

0.584
  recA Streptococcus mitis NCTC 12261

61.538

94.944

0.584
  recA Lactococcus lactis subsp. cremoris KW2

61.538

94.944

0.584
  recA Streptococcus pneumoniae Rx1

61.538

94.944

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

61.493

94.101

0.579
  recA Streptococcus pyogenes NZ131

60.831

94.663

0.576
  recA Streptococcus mutans UA159

60.651

94.944

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

91.011

0.545