Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JGR68_RS05405 Genome accession   NZ_CP067113
Coordinates   1138677..1139777 (+) Length   366 a.a.
NCBI ID   WP_199361459.1    Uniprot ID   -
Organism   Luteimonas sp. MC1750     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1133677..1144777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGR68_RS05390 (JGR68_05390) - 1135382..1135876 (+) 495 WP_199361457.1 CinA family protein -
  JGR68_RS05395 (JGR68_05395) - 1136030..1137712 (+) 1683 WP_199361659.1 AarF/UbiB family protein -
  JGR68_RS05400 (JGR68_05400) lexA 1137746..1138453 (+) 708 WP_199361458.1 transcriptional repressor LexA -
  JGR68_RS05405 (JGR68_05405) recA 1138677..1139777 (+) 1101 WP_199361459.1 recombinase RecA Machinery gene
  JGR68_RS05410 (JGR68_05410) - 1139933..1140367 (+) 435 WP_234446601.1 regulatory protein RecX -
  JGR68_RS05415 (JGR68_05415) alaS 1140507..1143224 (+) 2718 WP_199361461.1 alanine--tRNA ligase -
  JGR68_RS05420 (JGR68_05420) csrA 1143365..1143568 (+) 204 WP_199361462.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39121.83 Da        Isoelectric Point: 5.3770

>NTDB_id=525111 JGR68_RS05405 WP_199361459.1 1138677..1139777(+) (recA) [Luteimonas sp. MC1750]
MDENKKRALSAALGQIEKQYGKGSVMRMGDRVAEVIPVIPTGSLLLDVALGIGGLPKGRVVEVYGPESSGKTTLTLQAIA
QCQKQGGTAAFIDAEHALDPTYAQKLGVNVDDLLVSQPDTGEQALEIADMLVRSNAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCLVVFINQLRHKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTRIKVVKNKMAPPFKQVITEILYGEGISREGELIDMAVDAKLVEKAGAWYSYGDERIGQGKENARQYLKENVAVAERL
EAELRARMAPLQGAAAAVVEDDDAGAEDEGEGEGATVAKRGRGARA

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=525111 JGR68_RS05405 WP_199361459.1 1138677..1139777(+) (recA) [Luteimonas sp. MC1750]
ATGGACGAGAACAAGAAGCGCGCGCTTTCCGCCGCACTGGGCCAGATCGAGAAGCAGTACGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGTCGCCGAAGTCATCCCGGTGATCCCCACCGGCTCGCTGCTGCTCGACGTCGCGCTCGGCATCGGTG
GCCTGCCCAAGGGCCGCGTGGTCGAGGTCTACGGCCCGGAGTCGTCGGGCAAGACCACGCTCACCCTGCAGGCCATCGCC
CAGTGCCAGAAGCAGGGCGGCACCGCGGCCTTCATCGACGCCGAGCACGCGCTCGATCCCACCTATGCGCAGAAGCTGGG
CGTCAACGTCGACGACCTCCTGGTCTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CGAACGCGGTCGACATGGTGGTGGTCGACTCGGTCGCCGCGCTGACGCCCAAGGCCGAGATCGAGGGCGAGATGGGCGAC
CAGCTCCCCGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCAGCAACTGCCT
GGTGGTCTTCATCAACCAGCTGCGCCACAAGATCGGCATCATGATGCCGGGCCAGAGCCCGGAGACCACCACCGGTGGCA
ACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCCGCATCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGTCATCACCGAGATCCTCTACGGCGA
GGGCATCAGCCGCGAGGGCGAGCTGATCGACATGGCCGTGGATGCCAAGCTCGTGGAGAAGGCCGGCGCCTGGTACAGCT
ACGGCGACGAGCGCATCGGCCAGGGCAAGGAGAATGCCCGCCAGTACCTCAAGGAGAACGTCGCGGTGGCCGAGCGCCTG
GAGGCCGAGCTGCGCGCGAGGATGGCGCCGCTCCAGGGTGCGGCCGCCGCCGTCGTGGAGGATGACGATGCCGGCGCCGA
GGATGAAGGCGAAGGCGAGGGCGCGACGGTCGCCAAGCGCGGCCGGGGCGCCAGGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

68.272

96.448

0.658
  recA Pseudomonas stutzeri DSM 10701

72.866

89.617

0.653
  recA Acinetobacter baumannii D1279779

68.805

93.716

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.859

89.071

0.631
  recA Vibrio cholerae strain A1552

70.769

88.798

0.628
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.769

88.798

0.628
  recA Neisseria gonorrhoeae MS11

64.407

96.721

0.623
  recA Neisseria gonorrhoeae MS11

64.407

96.721

0.623
  recA Neisseria gonorrhoeae strain FA1090

64.407

96.721

0.623
  recA Glaesserella parasuis strain SC1401

64.407

96.721

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.519

94.809

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.763

90.984

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

59.942

94.809

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

87.978

0.555
  recA Streptococcus pneumoniae Rx1

56.742

97.268

0.552
  recA Streptococcus pneumoniae D39

56.742

97.268

0.552
  recA Streptococcus pneumoniae TIGR4

56.742

97.268

0.552
  recA Streptococcus pneumoniae R6

56.742

97.268

0.552
  recA Helicobacter pylori strain NCTC11637

61.846

88.798

0.549
  recA Helicobacter pylori 26695

61.538

88.798

0.546
  recA Streptococcus mitis SK321

57.184

95.082

0.544
  recA Streptococcus mitis NCTC 12261

56.897

95.082

0.541
  recA Streptococcus mutans UA159

58.383

91.257

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.716

89.344

0.525
  recA Streptococcus pyogenes NZ131

57.879

90.164

0.522
  recA Lactococcus lactis subsp. cremoris KW2

58.282

89.071

0.519