Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JGR64_RS04815 Genome accession   NZ_CP067112
Coordinates   1054312..1055394 (+) Length   360 a.a.
NCBI ID   WP_199375423.1    Uniprot ID   -
Organism   Luteimonas sp. MC1572     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049312..1060394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGR64_RS04800 (JGR64_04800) - 1051235..1051729 (+) 495 WP_199375421.1 CinA family protein -
  JGR64_RS04805 (JGR64_04805) - 1051749..1053431 (+) 1683 WP_199375723.1 AarF/UbiB family protein -
  JGR64_RS04810 (JGR64_04810) lexA 1053484..1054122 (+) 639 WP_199375422.1 transcriptional repressor LexA -
  JGR64_RS04815 (JGR64_04815) recA 1054312..1055394 (+) 1083 WP_199375423.1 recombinase RecA Machinery gene
  JGR64_RS04820 (JGR64_04820) - 1055412..1055933 (+) 522 WP_199375424.1 regulatory protein RecX -
  JGR64_RS04825 (JGR64_04825) alaS 1056096..1058738 (+) 2643 WP_199375725.1 alanine--tRNA ligase -
  JGR64_RS04830 (JGR64_04830) csrA 1058891..1059094 (+) 204 WP_199375425.1 carbon storage regulator CsrA -
  JGR64_RS04845 (JGR64_04845) - 1059492..1060340 (-) 849 WP_199375426.1 TIGR04325 family methyltransferase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38961.85 Da        Isoelectric Point: 6.0059

>NTDB_id=525094 JGR64_RS04815 WP_199375423.1 1054312..1055394(+) (recA) [Luteimonas sp. MC1572]
MDENKKRALSAALGQIEKQYGKGSVIRMGDRVAEVVPVIPTGSLQLDIALGIGGLPRGRVIEIYGPESSGKTTLTLQTIA
ECQKLGGVAAFIDAEHALDPTYAQKLGVNVDDLLVSQPDTGEQALEIADMLVRSNAVDMVVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCMVFFINQLRHKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTRIKVVKNKMAPPFKQVITEILYGEGISREGELIDMAVEAKIVEKAGAWYSYGEERIGQGKENARQYLKENIAVAQRI
ESELRARLAPVVAPVVAAEDAEDEAETKDKPKSRAKAAEA

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=525094 JGR64_RS04815 WP_199375423.1 1054312..1055394(+) (recA) [Luteimonas sp. MC1572]
ATGGACGAGAACAAGAAGCGCGCGCTTTCAGCGGCCCTGGGCCAGATCGAAAAGCAGTACGGCAAAGGCTCGGTGATCCG
CATGGGTGACCGCGTCGCCGAAGTGGTTCCGGTGATCCCCACCGGTTCGCTGCAGCTCGACATCGCGCTCGGCATCGGCG
GCCTGCCGCGCGGCCGCGTGATCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACCACGCTGACCCTGCAGACCATCGCC
GAATGCCAGAAGCTCGGCGGCGTGGCGGCGTTCATCGACGCCGAGCACGCGCTCGATCCCACCTACGCGCAGAAGCTCGG
CGTCAACGTCGATGACCTGCTGGTGTCGCAGCCGGACACCGGTGAGCAGGCGCTGGAGATCGCCGACATGCTGGTGCGCT
CCAATGCCGTCGACATGGTGGTGATCGACTCGGTCGCCGCGCTCACCCCGCGCGCCGAGATCGAGGGCGAGATGGGCGAC
CAGCTGCCCGGCCTGCAGGCGCGGCTCATGAGCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCAGCAACTGCAT
GGTGTTCTTCATCAACCAGCTGCGCCACAAGATCGGCATCATGATGCCCGGCCAGAGCCCGGAGACCACCACCGGCGGCA
ACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGTGACGAGATCATCGGC
AACCAGACCCGCATCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGTCATCACCGAGATCCTCTATGGCGA
GGGCATCAGCCGCGAAGGCGAGCTGATCGACATGGCGGTCGAGGCCAAGATCGTCGAGAAGGCCGGTGCCTGGTACAGCT
ACGGCGAGGAGCGCATCGGCCAGGGCAAGGAGAACGCCCGCCAGTACCTCAAGGAGAACATCGCCGTGGCCCAGCGCATC
GAATCCGAGCTGCGCGCGCGCCTGGCGCCGGTGGTGGCGCCGGTCGTGGCGGCTGAAGACGCCGAGGATGAGGCCGAAAC
CAAGGACAAGCCCAAGTCGCGGGCCAAGGCGGCCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

69.653

96.111

0.669
  recA Acinetobacter baumannii D1279779

68.786

96.111

0.661
  recA Ralstonia pseudosolanacearum GMI1000

72.121

91.667

0.661
  recA Acinetobacter baylyi ADP1

67.521

97.5

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.817

91.111

0.636
  recA Vibrio cholerae strain A1552

69.817

91.111

0.636
  recA Glaesserella parasuis strain SC1401

62.751

96.944

0.608
  recA Neisseria gonorrhoeae MS11

66.055

90.833

0.6
  recA Neisseria gonorrhoeae MS11

66.055

90.833

0.6
  recA Neisseria gonorrhoeae strain FA1090

66.055

90.833

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.756

95.556

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

89.444

0.564
  recA Helicobacter pylori strain NCTC11637

62.154

90.278

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

62.037

90

0.558
  recA Helicobacter pylori 26695

61.846

90.278

0.558
  recA Streptococcus pneumoniae R6

57.102

97.778

0.558
  recA Streptococcus pneumoniae Rx1

57.102

97.778

0.558
  recA Streptococcus pneumoniae D39

57.102

97.778

0.558
  recA Streptococcus pneumoniae TIGR4

57.102

97.778

0.558
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

92.5

0.556
  recA Streptococcus mitis SK321

57.184

96.667

0.553
  recA Streptococcus mitis NCTC 12261

57.02

96.944

0.553
  recA Streptococcus pyogenes NZ131

56.091

98.056

0.55
  recA Streptococcus mutans UA159

56.25

97.778

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.41

90.833

0.531
  recA Lactococcus lactis subsp. cremoris KW2

58.589

90.556

0.531