Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | JIO00_RS06215 | Genome accession | NZ_CP067098 |
| Coordinates | 1406253..1407305 (+) | Length | 350 a.a. |
| NCBI ID | WP_007907270.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. SW-3 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1374827..1410998 | 1406253..1407305 | within | 0 |
Gene organization within MGE regions
Location: 1374827..1410998
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JIO00_RS06035 (JIO00_06035) | ftsB | 1374827..1375105 (+) | 279 | WP_008028992.1 | cell division protein FtsB | - |
| JIO00_RS06040 (JIO00_06040) | ispD | 1375102..1375809 (+) | 708 | WP_010462788.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| JIO00_RS06045 (JIO00_06045) | - | 1375946..1376842 (-) | 897 | WP_010462786.1 | LysR substrate-binding domain-containing protein | - |
| JIO00_RS06050 (JIO00_06050) | - | 1376950..1378062 (+) | 1113 | WP_010462785.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| JIO00_RS06055 (JIO00_06055) | fghA | 1378071..1378916 (+) | 846 | WP_154503315.1 | S-formylglutathione hydrolase | - |
| JIO00_RS06060 (JIO00_06060) | ispF | 1378960..1379433 (+) | 474 | WP_010462780.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| JIO00_RS06065 (JIO00_06065) | truD | 1379430..1380488 (+) | 1059 | WP_010462778.1 | tRNA pseudouridine(13) synthase TruD | - |
| JIO00_RS06070 (JIO00_06070) | surE | 1380476..1381225 (+) | 750 | WP_077748335.1 | 5'/3'-nucleotidase SurE | - |
| JIO00_RS06075 (JIO00_06075) | - | 1381267..1381902 (+) | 636 | WP_010462773.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| JIO00_RS06080 (JIO00_06080) | - | 1382114..1382971 (+) | 858 | WP_083374911.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| JIO00_RS06085 (JIO00_06085) | rpoS | 1383077..1384084 (+) | 1008 | WP_010462770.1 | RNA polymerase sigma factor RpoS | - |
| JIO00_RS06090 (JIO00_06090) | fdxA | 1384559..1384882 (-) | 324 | WP_008154011.1 | ferredoxin FdxA | - |
| JIO00_RS06095 (JIO00_06095) | mutS | 1385025..1387592 (-) | 2568 | WP_191650639.1 | DNA mismatch repair protein MutS | - |
| JIO00_RS06100 (JIO00_06100) | - | 1387804..1388538 (+) | 735 | WP_042932336.1 | XRE family transcriptional regulator | - |
| JIO00_RS06105 (JIO00_06105) | - | 1389037..1389384 (+) | 348 | WP_010462762.1 | phage holin family protein | - |
| JIO00_RS06110 (JIO00_06110) | - | 1389516..1390100 (+) | 585 | WP_010462760.1 | hypothetical protein | - |
| JIO00_RS06115 (JIO00_06115) | - | 1390097..1390279 (+) | 183 | WP_010462758.1 | DUF2635 domain-containing protein | - |
| JIO00_RS06120 (JIO00_06120) | - | 1390279..1391775 (+) | 1497 | WP_077748339.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| JIO00_RS06125 (JIO00_06125) | - | 1391856..1392203 (+) | 348 | WP_109628232.1 | phage tail tube protein | - |
| JIO00_RS06130 (JIO00_06130) | - | 1392200..1392496 (+) | 297 | WP_172792335.1 | phage tail assembly protein | - |
| JIO00_RS06135 (JIO00_06135) | - | 1392627..1394504 (+) | 1878 | WP_010462750.1 | hypothetical protein | - |
| JIO00_RS06140 (JIO00_06140) | - | 1394491..1395726 (+) | 1236 | WP_010462749.1 | DNA circularization N-terminal domain-containing protein | - |
| JIO00_RS06145 (JIO00_06145) | - | 1395729..1396772 (+) | 1044 | WP_010462746.1 | hypothetical protein | - |
| JIO00_RS06150 (JIO00_06150) | - | 1396847..1397356 (+) | 510 | WP_010462745.1 | phage baseplate assembly protein | - |
| JIO00_RS06155 (JIO00_06155) | - | 1397356..1397754 (+) | 399 | WP_172792338.1 | phage GP46 family protein | - |
| JIO00_RS06160 (JIO00_06160) | - | 1397744..1398784 (+) | 1041 | WP_010462741.1 | baseplate J/gp47 family protein | - |
| JIO00_RS06165 (JIO00_06165) | - | 1398775..1399374 (+) | 600 | WP_010462739.1 | putative phage tail protein | - |
| JIO00_RS06170 (JIO00_06170) | - | 1399386..1400537 (+) | 1152 | WP_010462737.1 | hypothetical protein | - |
| JIO00_RS06175 (JIO00_06175) | - | 1400534..1401049 (+) | 516 | WP_042932334.1 | hypothetical protein | - |
| JIO00_RS06180 (JIO00_06180) | - | 1401174..1402268 (+) | 1095 | WP_200667805.1 | phage tail protein | - |
| JIO00_RS06185 (JIO00_06185) | - | 1402276..1402836 (+) | 561 | WP_010462731.1 | tail fiber assembly protein | - |
| JIO00_RS06190 (JIO00_06190) | - | 1402876..1404087 (+) | 1212 | WP_200667807.1 | carbohydrate-binding protein CenC | - |
| JIO00_RS06195 (JIO00_06195) | - | 1404099..1404503 (+) | 405 | WP_200667809.1 | phage tail assembly chaperone | - |
| JIO00_RS06200 (JIO00_06200) | - | 1404507..1405070 (+) | 564 | WP_145307543.1 | glycoside hydrolase family 19 protein | - |
| JIO00_RS06205 (JIO00_06205) | - | 1405052..1405588 (+) | 537 | WP_200667811.1 | lysis system i-spanin subunit Rz | - |
| JIO00_RS06210 (JIO00_06210) | - | 1405669..1406169 (+) | 501 | WP_010462721.1 | CinA family protein | - |
| JIO00_RS06215 (JIO00_06215) | recA | 1406253..1407305 (+) | 1053 | WP_007907270.1 | recombinase RecA | Machinery gene |
| JIO00_RS06220 (JIO00_06220) | recX | 1407314..1407781 (+) | 468 | WP_200667813.1 | recombination regulator RecX | - |
| JIO00_RS06225 (JIO00_06225) | - | 1407838..1408956 (-) | 1119 | WP_083374902.1 | TIGR00730 family Rossman fold protein | - |
| JIO00_RS06230 (JIO00_06230) | - | 1409435..1409629 (+) | 195 | WP_010462709.1 | hypothetical protein | - |
| JIO00_RS06235 (JIO00_06235) | - | 1409630..1410055 (-) | 426 | WP_008153984.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| JIO00_RS06240 (JIO00_06240) | - | 1410240..1410998 (+) | 759 | WP_145307539.1 | tRNA-uridine aminocarboxypropyltransferase | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37269.83 Da Isoelectric Point: 5.5328
>NTDB_id=525018 JIO00_RS06215 WP_007907270.1 1406253..1407305(+) (recA) [Pseudomonas sp. SW-3]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAPDVKASPVKETADDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAPDVKASPVKETADDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=525018 JIO00_RS06215 WP_007907270.1 1406253..1407305(+) (recA) [Pseudomonas sp. SW-3]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GTCTGCCAAAAGGTCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACGCTGTCGGTGATCGCC
CAGGCTCAAAAAGCGGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTTCCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGT
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGTCGTACCGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTTGAGAAGTCCGGCGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAATCCGGAAATTGCCGCCAAGCTCGAGAAG
CAACTGCGTGACAAGTTGCTGACCCCGGCGCCGGACGTCAAAGCATCGCCGGTCAAAGAGACGGCTGATGACCTGGCTGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GTCTGCCAAAAGGTCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACGCTGTCGGTGATCGCC
CAGGCTCAAAAAGCGGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTTCCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGT
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGTCGTACCGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTTGAGAAGTCCGGCGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAATCCGGAAATTGCCGCCAAGCTCGAGAAG
CAACTGCGTGACAAGTTGCTGACCCCGGCGCCGGACGTCAAAGCATCGCCGGTCAAAGAGACGGCTGATGACCTGGCTGA
CGCTGATATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.