Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JFY49_RS07005 Genome accession   NZ_CP067019
Coordinates   1405684..1406727 (-) Length   347 a.a.
NCBI ID   WP_086196385.1    Uniprot ID   -
Organism   Acinetobacter sp. CS-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1400684..1411727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS06970 (JFY49_06970) - 1400823..1401320 (+) 498 WP_086196390.1 OmpH family outer membrane protein -
  JFY49_RS06975 (JFY49_06975) lpxD 1401324..1402391 (+) 1068 WP_200224616.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  JFY49_RS06980 (JFY49_06980) fabZ 1402397..1402882 (+) 486 WP_171263214.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JFY49_RS06985 (JFY49_06985) lpxA 1402879..1403667 (+) 789 WP_086196388.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  JFY49_RS06990 (JFY49_06990) - 1403720..1404580 (-) 861 WP_200224617.1 YbgF trimerization domain-containing protein -
  JFY49_RS07000 (JFY49_07000) - 1405011..1405610 (-) 600 WP_200224618.1 regulatory protein RecX -
  JFY49_RS07005 (JFY49_07005) recA 1405684..1406727 (-) 1044 WP_086196385.1 recombinase RecA Machinery gene
  JFY49_RS07010 (JFY49_07010) - 1406883..1407320 (-) 438 WP_180176326.1 RNA-binding S4 domain-containing protein -
  JFY49_RS07015 (JFY49_07015) - 1407313..1407999 (-) 687 WP_180176325.1 HAD-IA family hydrolase -
  JFY49_RS07020 (JFY49_07020) - 1408013..1408867 (+) 855 WP_180176324.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  JFY49_RS07025 (JFY49_07025) - 1408926..1409669 (+) 744 WP_180176323.1 histidine phosphatase family protein -
  JFY49_RS07030 (JFY49_07030) rpsT 1409849..1410115 (-) 267 WP_039622003.1 30S ribosomal protein S20 -
  JFY49_RS07035 (JFY49_07035) - 1410330..1411004 (+) 675 WP_200224619.1 NAD(P)H-binding protein -
  JFY49_RS07040 (JFY49_07040) rraA 1411008..1411520 (+) 513 WP_086196380.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37564.00 Da        Isoelectric Point: 4.9373

>NTDB_id=524470 JFY49_RS07005 WP_086196385.1 1405684..1406727(-) (recA) [Acinetobacter sp. CS-2]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TRVKVVKNKMAPPFKEAVFQILYGKGVNHLGELIDLAVQQEIIQKAGAWYSYQGDKIGQGKNNVIRHLEENPQIAVEVEK
LIREQLLTTGTAPVEDKDEAEPDFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=524470 JFY49_RS07005 WP_086196385.1 1405684..1406727(-) (recA) [Acinetobacter sp. CS-2]
ATGGATGATAATAAAAGCAAGGCGCTAAATGCTGCCCTAAGCCAGATTGAAAAACAGTTTGGTAAAAATACAGTAATGCG
CCTTGGTGACAATACTGTACAGGCCGTTGAAGCGGTCTCTACAGGCTCTTTAACCCTGGATATTGCTCTGGGTATTGGTG
GTTTACCTAAAGGCCGTATCGTTGAAATTTACGGCCCTGAATCTTCAGGTAAAACCACCATGACTTTGCAAGCTATTGCA
GAATGTCAAAAAGCGGGTGGTACATGTGCGTTCATTGATGCCGAACATGCGCTTGATCCGCAATATGCCCGCAAGTTAGG
CGTAGATATCGACAATCTTCTGGTGTCACAGCCTGACAATGGTGAACAGGCACTTGAAATTGCCGACATGCTGGTACGCT
CTGGCGCGATTGACCTGATCGTGGTCGACTCCGTAGCAGCCCTAACCCCACGCGCGGAAATTGAAGGTGAAATGGGTGAC
TCGCATATGGGTCTGCAAGCCCGTTTAATGAGCCAAGCATTGCGTAAAATCACCGGTAATGCAAAGCGCTCTAACTGTAT
GGTGATCTTCATTAACCAGATCCGTATGAAGATTGGCGTGATGTTTGGTAGCCCTGAAACCACAACGGGTGGTAATGCGC
TTAAATTCTACGCTTCTGTACGTCTCGATATCCGCCGTATCGGTCAGGTAAAAGAAGGTGATGAAATCATCGGTTCGGAA
ACCCGCGTAAAAGTCGTGAAGAACAAGATGGCGCCTCCATTTAAAGAAGCGGTATTCCAAATTCTGTATGGTAAAGGTGT
CAACCATTTAGGCGAATTGATTGACCTCGCCGTACAGCAAGAGATCATCCAAAAAGCTGGCGCATGGTATTCTTATCAGG
GCGATAAAATTGGCCAAGGTAAAAACAACGTGATTCGCCATCTGGAAGAAAATCCACAAATTGCAGTAGAAGTGGAAAAA
CTGATTCGTGAACAACTCCTTACTACAGGTACAGCACCGGTAGAAGACAAGGATGAAGCTGAACCAGACTTTTTAGATGC
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

90.544

100

0.911
  recA Acinetobacter baumannii D1279779

91.329

99.712

0.911
  recA Pseudomonas stutzeri DSM 10701

75.684

94.813

0.718
  recA Vibrio cholerae strain A1552

74.312

94.236

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

94.236

0.7
  recA Glaesserella parasuis strain SC1401

71.914

93.372

0.671
  recA Neisseria gonorrhoeae MS11

66.282

100

0.663
  recA Neisseria gonorrhoeae MS11

66.282

100

0.663
  recA Neisseria gonorrhoeae strain FA1090

66.282

100

0.663
  recA Ralstonia pseudosolanacearum GMI1000

69.817

94.524

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.865

98.559

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.653

95.389

0.617
  recA Helicobacter pylori strain NCTC11637

63.303

94.236

0.597
  recA Streptococcus mitis NCTC 12261

60.526

98.559

0.597
  recA Helicobacter pylori 26695

62.997

94.236

0.594
  recA Streptococcus mitis SK321

60.059

97.406

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.346

93.372

0.582
  recA Streptococcus mutans UA159

61.774

94.236

0.582
  recA Streptococcus pneumoniae D39

61.963

93.948

0.582
  recA Streptococcus pneumoniae Rx1

61.963

93.948

0.582
  recA Streptococcus pneumoniae R6

61.963

93.948

0.582
  recA Streptococcus pneumoniae TIGR4

61.963

93.948

0.582
  recA Streptococcus pyogenes NZ131

61.538

93.66

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.795

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

92.507

0.559
  recA Lactococcus lactis subsp. cremoris KW2

58.824

93.084

0.548