Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JH307_RS09040 Genome accession   NZ_CP066969
Coordinates   2042623..2043654 (+) Length   343 a.a.
NCBI ID   WP_011036899.1    Uniprot ID   Q60101
Organism   Xanthomonas campestris strain 10-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2037623..2048654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH307_RS09030 (JH307_09015) ubiB 2040066..2041742 (+) 1677 WP_011036897.1 2-polyprenylphenol 6-hydroxylase -
  JH307_RS09035 (JH307_09020) lexA 2041809..2042450 (+) 642 WP_011269877.1 transcriptional repressor LexA -
  JH307_RS09040 (JH307_09025) recA 2042623..2043654 (+) 1032 WP_011036899.1 recombinase RecA Machinery gene
  JH307_RS09045 (JH307_09030) recX 2043770..2044258 (+) 489 WP_076035908.1 recombination regulator RecX -
  JH307_RS09050 (JH307_09035) alaS 2044360..2047008 (+) 2649 WP_076039145.1 alanine--tRNA ligase -
  JH307_RS09055 (JH307_09040) csrA 2047150..2047362 (+) 213 WP_014507494.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37017.64 Da        Isoelectric Point: 5.0702

>NTDB_id=523706 JH307_RS09040 WP_011036899.1 2042623..2043654(+) (recA) [Xanthomonas campestris strain 10-16]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQGKDNARGYLRDNPQVAIKL
EAELREKFQPAEAPREAGETESE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=523706 JH307_RS09040 WP_011036899.1 2042623..2043654(+) (recA) [Xanthomonas campestris strain 10-16]
ATGGATGAGAACAAGAAGCGCGCCCTTTCCGCCGCCCTGAGCCAGATCGAAAAGCAATTCGGCAAAGGCTCGGTGATGCG
CATGGGCGACCGGGTCATCGAGGCCGTCGAGGTCATCCCGACCGGTTCGCTGATGCTGGACATCGCACTGGGGATCGGCG
GCCTGCCGAAGGGCCGCGTGGTCGAGATCTACGGGCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGGCCATTGCC
GAATGCCAGAAGCTGGGCGGCACCGCGGCCTTCATCGACGCCGAGCATGCGCTGGACCCGATCTATGCCGCCAAGCTGGG
CGTCAATGTCGATGACCTGCTGCTGTCGCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CGAGCTCGGTGGACATCGTGGTGATCGACTCGGTTGCCGCGCTGACCCCGAAGGCCGAAATCGAAGGCGAGATGGGCGAC
CAGCTTCCTGGCCTGCAGGCCCGTTTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAACACGCT
GGTGGTCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ATGCGCTGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGCCGCATCGGTGCGATCAAGAAGGGTGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCATTACCGAGATCCTGTACGGCGA
AGGCATCAGCCGCGAGGGTGAGCTGATCGATATGGGCGTGGAAGCCAAGCTGGTCGACAAGGCAGGTGCCTGGTACAGCT
ACGGCGACGAGCGTATCGGCCAGGGCAAGGACAACGCCCGTGGGTATCTGCGCGACAACCCGCAGGTGGCGATCAAGCTC
GAAGCCGAGCTGCGCGAGAAGTTCCAGCCCGCCGAGGCGCCGCGTGAAGCCGGCGAGACCGAGAGCGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q60101

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

69.971

100

0.7
  recA Ralstonia pseudosolanacearum GMI1000

76.038

91.254

0.694
  recA Pseudomonas stutzeri DSM 10701

70.326

98.251

0.691
  recA Acinetobacter baumannii D1279779

71.646

95.627

0.685
  recA Vibrio cholerae strain A1552

68.129

99.708

0.679
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.129

99.708

0.679
  recA Neisseria gonorrhoeae MS11

68.098

95.044

0.647
  recA Neisseria gonorrhoeae MS11

68.098

95.044

0.647
  recA Neisseria gonorrhoeae strain FA1090

68.098

95.044

0.647
  recA Glaesserella parasuis strain SC1401

68.111

94.169

0.641
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

97.376

0.612
  recA Latilactobacillus sakei subsp. sakei 23K

61.677

97.376

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.669

92.42

0.598
  recA Helicobacter pylori strain NCTC11637

61.145

96.793

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

62.154

94.752

0.589
  recA Helicobacter pylori 26695

60.843

96.793

0.589
  recA Streptococcus mitis SK321

60.671

95.627

0.58
  recA Streptococcus pneumoniae Rx1

60.366

95.627

0.577
  recA Streptococcus mitis NCTC 12261

60.366

95.627

0.577
  recA Streptococcus pneumoniae D39

60.366

95.627

0.577
  recA Streptococcus pneumoniae R6

60.366

95.627

0.577
  recA Streptococcus pneumoniae TIGR4

60.366

95.627

0.577
  recA Streptococcus pyogenes NZ131

60

96.21

0.577
  recA Streptococcus mutans UA159

59.697

96.21

0.574
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.752

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.879

96.21

0.557