Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MRBBS_RS12265 Genome accession   NC_018268
Coordinates   2704710..2705825 (-) Length   371 a.a.
NCBI ID   WP_014871841.1    Uniprot ID   -
Organism   Marinobacter sp. BSs20148     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2699710..2710825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRBBS_RS12250 (MRBBS_2552) fixJ 2700927..2701553 (-) 627 WP_014871838.1 response regulator FixJ -
  MRBBS_RS12255 (MRBBS_2553) - 2701589..2703997 (-) 2409 WP_014871839.1 Lon protease family protein -
  MRBBS_RS12260 (MRBBS_2554) - 2704114..2704644 (-) 531 WP_014871840.1 flavodoxin family protein -
  MRBBS_RS12265 (MRBBS_2555) recA 2704710..2705825 (-) 1116 WP_014871841.1 recombinase RecA Machinery gene
  MRBBS_RS12270 (MRBBS_2556) - 2706013..2706516 (-) 504 WP_041635622.1 nicotinamide-nucleotide amidohydrolase family protein -
  MRBBS_RS12275 (MRBBS_2557) mutS 2706608..2709235 (+) 2628 WP_014871843.1 DNA mismatch repair protein MutS -
  MRBBS_RS12280 fdxA 2709400..2709723 (+) 324 WP_041635279.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39711.55 Da        Isoelectric Point: 6.7268

>NTDB_id=52322 MRBBS_RS12265 WP_014871841.1 2704710..2705825(-) (recA) [Marinobacter sp. BSs20148]
MDDNRKKALSAALTQIERQFGKGAIMKMGDHPREAIPSVSTGSLGLDVALGIGGLPYGRVCEIYGPESSGKTTLTLQVIA
EAQKQGKTCAFVDAEHALDPQYAEKLGVNVDELLVSQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLNGNVKNANVLLIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDGDEVTGNE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRMAEVVDMGVKEGFVDKAGAWYAYNGDKIGQGKANACKFLEENLEMAKEIET
KVRDKLMPKPEKKDAAKDAGKDAGKDAGKNAGKNAGKAAAVAPAEASDELL

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=52322 MRBBS_RS12265 WP_014871841.1 2704710..2705825(-) (recA) [Marinobacter sp. BSs20148]
ATGGATGACAACCGCAAGAAAGCTTTATCCGCCGCTCTGACCCAGATTGAACGCCAGTTTGGTAAAGGCGCCATCATGAA
GATGGGCGACCACCCCCGTGAGGCAATCCCGTCCGTCTCTACCGGTTCTCTTGGTCTGGACGTTGCTCTTGGCATTGGTG
GCCTGCCTTATGGCCGGGTTTGTGAAATCTACGGCCCTGAAAGCTCTGGTAAAACTACGCTGACTTTGCAGGTTATTGCC
GAAGCCCAGAAGCAGGGCAAGACGTGTGCTTTTGTTGATGCTGAGCACGCCCTTGATCCTCAATATGCTGAAAAGCTGGG
CGTGAACGTTGATGAGTTGCTGGTTTCCCAGCCCGATACCGGTGAGCAGGCGTTAGAAATCTGCGACATGCTGGTGCGCT
CCAACGCGGTGGATGTCATCATTGTGGACTCCGTTGCCGCATTGACGCCAAAAGCTGAAATTGAAGGCGAAATGGGTGAC
TCTCATGTTGGTCTTCAGGCCCGCCTGATGTCACAGGCTCTGCGCAAACTGAATGGCAACGTCAAGAATGCCAACGTCCT
GCTGATTTTCATCAACCAGATCCGCATGAAAATAGGTGTGATGTTCGGCAGCCCCGAAACCACTACCGGCGGCAACGCGT
TGAAATTCTATGCCTCTGTGCGTCTGGATATCCGTCGCATTGGCGCAGTGAAAGACGGCGACGAAGTCACCGGTAACGAA
ACCCGGGTGAAAGTGGTTAAAAACAAAGTGGCACCGCCGTTCCGCCAGGCCGAATTCCAGATTTTGTACGGCAAGGGCAT
TTACCGCATGGCCGAAGTGGTGGACATGGGTGTAAAGGAAGGCTTTGTAGATAAGGCTGGCGCCTGGTACGCCTACAACG
GTGATAAAATTGGCCAAGGCAAAGCCAATGCTTGCAAATTTCTGGAAGAAAACCTGGAAATGGCGAAAGAAATTGAAACC
AAAGTGCGCGACAAGCTGATGCCCAAACCAGAGAAAAAAGACGCGGCAAAAGATGCAGGGAAAGATGCGGGGAAAGACGC
AGGAAAGAATGCAGGGAAAAATGCAGGAAAAGCTGCTGCAGTGGCGCCTGCAGAAGCTAGCGACGAACTACTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

82.263

88.14

0.725
  recA Acinetobacter baylyi ADP1

71.598

91.105

0.652
  recA Glaesserella parasuis strain SC1401

70.262

92.453

0.65
  recA Vibrio cholerae strain A1552

72.508

89.218

0.647
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.508

89.218

0.647
  recA Ralstonia pseudosolanacearum GMI1000

70.796

91.375

0.647
  recA Acinetobacter baumannii D1279779

72.171

88.14

0.636
  recA Neisseria gonorrhoeae MS11

70.679

87.332

0.617
  recA Neisseria gonorrhoeae MS11

70.679

87.332

0.617
  recA Neisseria gonorrhoeae strain FA1090

70.679

87.332

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

88.14

0.566
  recA Helicobacter pylori strain NCTC11637

60.767

91.375

0.555
  recA Helicobacter pylori 26695

60.767

91.375

0.555
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.534

90.836

0.55
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

86.523

0.539
  recA Streptococcus mutans UA159

59.077

87.601

0.518
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

86.523

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.951

87.332

0.515
  recA Streptococcus pyogenes NZ131

57.622

88.41

0.509
  recA Streptococcus pneumoniae D39

57.669

87.871

0.507
  recA Streptococcus pneumoniae R6

57.669

87.871

0.507
  recA Streptococcus pneumoniae TIGR4

57.669

87.871

0.507
  recA Streptococcus pneumoniae Rx1

57.669

87.871

0.507
  recA Streptococcus mitis NCTC 12261

57.585

87.062

0.501
  recA Streptococcus mitis SK321

57.585

87.062

0.501
  recA Lactococcus lactis subsp. cremoris KW2

57.276

87.062

0.499

Multiple sequence alignment