Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JCR23_RS07410 Genome accession   NZ_CP066883
Coordinates   1623669..1624670 (+) Length   333 a.a.
NCBI ID   WP_009084978.1    Uniprot ID   X5KFG3
Organism   Elizabethkingia sp. M8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1618669..1629670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR23_RS07390 (JCR23_07390) - 1619543..1619761 (-) 219 WP_200403034.1 hypothetical protein -
  JCR23_RS19310 - 1620377..1620793 (+) 417 WP_234034184.1 hypothetical protein -
  JCR23_RS19315 - 1620812..1621618 (+) 807 WP_234034235.1 tyrosine-type recombinase/integrase -
  JCR23_RS07400 (JCR23_07400) - 1621662..1622789 (+) 1128 WP_370527311.1 helicase-related protein -
  JCR23_RS07410 (JCR23_07410) recA 1623669..1624670 (+) 1002 WP_009084978.1 recombinase RecA Machinery gene
  JCR23_RS07415 (JCR23_07415) htpG 1624816..1626711 (+) 1896 WP_024564599.1 molecular chaperone HtpG -
  JCR23_RS07420 (JCR23_07420) - 1627518..1627838 (+) 321 WP_058877490.1 hypothetical protein -
  JCR23_RS07425 (JCR23_07425) - 1628083..1628877 (-) 795 WP_104916397.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35884.04 Da        Isoelectric Point: 5.3284

>NTDB_id=522924 JCR23_RS07410 WP_009084978.1 1623669..1624670(+) (recA) [Elizabethkingia sp. M8]
MSNTDDKKKALALVLEKLDKTYGKGTVMTLGEDSVDHSIEVIPSGSLGLDLALGVGGYPKGRIIEIYGPESSGKTTLTLH
AIAEAQKQGGIAAFIDAEHAFDRNYAAKLGINLEDLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKQGDEA
VGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKVGEILDQGVELGVIQKSGSWFSYNDTKLGQGRDAVKDVIKDNPELQE
ELEEKIKEKINGN

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=522924 JCR23_RS07410 WP_009084978.1 1623669..1624670(+) (recA) [Elizabethkingia sp. M8]
ATGAGCAATACAGACGATAAGAAAAAAGCGCTGGCCCTTGTGCTGGAAAAGCTTGATAAAACCTACGGAAAAGGAACGGT
AATGACTTTAGGAGAGGATTCTGTAGACCACTCTATCGAAGTTATTCCTTCAGGTTCTTTAGGACTTGACCTTGCATTAG
GTGTGGGTGGTTATCCAAAAGGAAGAATTATCGAAATCTATGGACCTGAATCTTCAGGTAAAACAACCTTAACGCTTCAT
GCAATTGCTGAAGCTCAAAAACAAGGCGGAATTGCAGCATTTATTGATGCCGAGCACGCTTTCGACAGAAATTATGCAGC
TAAACTGGGAATTAACTTAGAAGACCTTATTATTTCTCAGCCGGACAATGGTGAGCAGGCATTGGAAATTGCAGATAACC
TGATCCGTTCAGGGGCAATTGACATTGTTGTAATAGACTCTGTAGCAGCTTTAACACCAAAAGCGGAAATTGAAGGAGAA
ATGGGAGATTCTAAAATGGGTCTTCATGCCAGATTAATGTCTCAGGCACTGAGAAAGCTTACAGCTACTATTTCCAGAAC
AAAATGTACCGTAATCTTCATTAACCAGTTAAGAGAAAAAATCGGTGTAATGTTCGGTAACCCAGAAACTACAACTGGTG
GTAATGCCCTTAAATTCTATGCATCTGTAAGAATCGATATCCGTAAGGCTAGTGCACCAATCAAACAAGGTGACGAGGCT
GTAGGTAGCCGTGTGAAAGTAAAAATTGTAAAAAATAAAGTAGCACCACCTTTCAAGCAAGCAGAATTCGACATTATGTA
CGGAGAGGGAGTTTCCAAAGTAGGGGAAATTCTGGATCAGGGTGTTGAATTAGGAGTTATCCAGAAAAGTGGTTCATGGT
TCAGCTACAATGATACTAAACTAGGTCAGGGTCGCGATGCGGTAAAAGACGTTATCAAAGACAATCCGGAACTTCAGGAA
GAATTAGAAGAAAAAATTAAAGAAAAGATCAACGGAAACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5KFG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

82.036

100

0.823
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

98.198

0.634
  recA Neisseria gonorrhoeae strain FA1090

62.918

98.799

0.622
  recA Glaesserella parasuis strain SC1401

62.918

98.799

0.622
  recA Neisseria gonorrhoeae MS11

62.918

98.799

0.622
  recA Neisseria gonorrhoeae MS11

62.918

98.799

0.622
  recA Helicobacter pylori 26695

61.976

100

0.622
  recA Helicobacter pylori strain NCTC11637

61.976

100

0.622
  recA Ralstonia pseudosolanacearum GMI1000

65.815

93.994

0.619
  recA Bacillus subtilis subsp. subtilis str. 168

63.777

96.997

0.619
  recA Acinetobacter baumannii D1279779

62.577

97.898

0.613
  recA Pseudomonas stutzeri DSM 10701

61.702

98.799

0.61
  recA Acinetobacter baylyi ADP1

61.963

97.898

0.607
  recA Streptococcus pyogenes NZ131

60.606

99.099

0.601
  recA Streptococcus mitis NCTC 12261

61.043

97.898

0.598
  recA Streptococcus mitis SK321

61.043

97.898

0.598
  recA Streptococcus mutans UA159

59.939

98.198

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.816

97.898

0.586
  recA Lactococcus lactis subsp. cremoris KW2

59.816

97.898

0.586
  recA Vibrio cholerae strain A1552

59.816

97.898

0.586
  recA Streptococcus pneumoniae TIGR4

59.451

98.498

0.586
  recA Streptococcus pneumoniae D39

59.451

98.498

0.586
  recA Streptococcus pneumoniae Rx1

59.451

98.498

0.586
  recA Streptococcus pneumoniae R6

59.451

98.498

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

59.752

96.997

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.156

100

0.562