Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JC200_RS00790 Genome accession   NZ_CP066784
Coordinates   169256..170302 (-) Length   348 a.a.
NCBI ID   WP_274434288.1    Uniprot ID   -
Organism   Alicyclobacillus sp. ALC3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 164256..175302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC200_RS00765 (JC200_00765) - 164621..165556 (-) 936 WP_274434284.1 membrane dipeptidase -
  JC200_RS00770 (JC200_00770) spoVS 165687..165947 (-) 261 WP_206652915.1 stage V sporulation protein SpoVS -
  JC200_RS00775 (JC200_00775) - 166034..166816 (-) 783 WP_274434285.1 TIGR00282 family metallophosphoesterase -
  JC200_RS00780 (JC200_00780) rny 166883..168424 (-) 1542 WP_274434286.1 ribonuclease Y -
  JC200_RS00785 (JC200_00785) - 168592..169266 (-) 675 WP_274434287.1 regulatory protein RecX -
  JC200_RS00790 (JC200_00790) recA 169256..170302 (-) 1047 WP_274434288.1 recombinase RecA Machinery gene
  JC200_RS00795 (JC200_00795) - 170524..172104 (-) 1581 WP_274434289.1 DEAD/DEAH box helicase -
  JC200_RS00800 (JC200_00800) - 172124..173389 (-) 1266 WP_274434290.1 competence/damage-inducible protein A -
  JC200_RS00805 (JC200_00805) pgsA 173391..173969 (-) 579 WP_274434291.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JC200_RS00810 (JC200_00810) - 174073..174564 (-) 492 WP_274434292.1 YajQ family cyclic di-GMP-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37466.62 Da        Isoelectric Point: 4.8218

>NTDB_id=522524 JC200_RS00790 WP_274434288.1 169256..170302(-) (recA) [Alicyclobacillus sp. ALC3]
MNDRQAALEMALKQIEKQFGKGSIMKLGEASAAMNIETISTGSIALDIALGVGGLPRGRIVEIYGPESSGKTTVALHCVA
EVQKRGGQAAFIDAEHALDPAYASKLGVNIDELLISQPDTGEQALEIAEALVRSGAVEIVVVDSVAALVPKNELEGDMGD
SHVGLQARLMSQALRKLAGAISKSKTIAIFINQIREKVGVMFGNPETTTGGRALKFYATVRLDVRRAEALKQGNDVVGNR
TRIKVVKNKVAPPFKQADVDIMFGEGISREGSIIDMAADVDIIQKSGAWYSFGDERLGQGRENAKMYLKEHPEIAEEIEQ
QVRVYYNVGGSTTSVEATAENEVFDFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=522524 JC200_RS00790 WP_274434288.1 169256..170302(-) (recA) [Alicyclobacillus sp. ALC3]
ATGAACGACCGACAAGCGGCTCTGGAGATGGCGCTCAAGCAGATTGAGAAACAGTTTGGCAAAGGGTCAATCATGAAACT
TGGGGAAGCATCTGCGGCAATGAATATTGAAACGATTTCAACGGGGTCAATTGCGCTCGATATTGCGCTCGGAGTCGGTG
GACTGCCGCGTGGACGGATTGTGGAAATTTATGGGCCGGAGTCGTCCGGTAAGACAACAGTGGCCCTGCACTGCGTCGCG
GAAGTCCAGAAACGGGGTGGACAAGCGGCGTTTATCGACGCAGAACATGCGCTCGACCCGGCATACGCATCCAAACTGGG
TGTCAATATTGACGAATTGCTAATTTCGCAGCCAGATACGGGAGAACAAGCACTGGAGATTGCTGAAGCTTTAGTGCGCA
GTGGCGCCGTGGAAATTGTCGTCGTTGACTCGGTGGCTGCGCTGGTGCCAAAGAATGAACTGGAAGGCGACATGGGAGAT
TCTCACGTAGGCTTGCAGGCTAGGCTCATGTCCCAGGCGCTGCGCAAGCTGGCAGGCGCTATCAGCAAATCGAAGACAAT
CGCTATTTTCATCAATCAGATTCGTGAGAAAGTGGGAGTCATGTTCGGCAATCCGGAAACTACCACAGGCGGCCGGGCGT
TGAAGTTCTATGCAACTGTGCGCCTGGATGTTCGCAGGGCGGAAGCACTGAAGCAGGGTAATGATGTGGTCGGAAATCGG
ACGCGCATCAAGGTCGTCAAGAACAAGGTAGCACCGCCGTTCAAACAGGCCGATGTCGACATTATGTTTGGCGAAGGCAT
TTCGCGAGAAGGCAGCATCATCGACATGGCTGCAGACGTGGACATCATTCAAAAGAGTGGAGCATGGTATTCGTTTGGTG
ACGAACGCCTTGGACAAGGTCGGGAGAACGCAAAAATGTACCTCAAAGAGCACCCGGAAATTGCCGAGGAAATTGAACAG
CAAGTGCGCGTTTACTACAACGTCGGCGGTTCGACGACAAGCGTTGAGGCGACGGCCGAAAACGAAGTGTTTGACTTTGA
AGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

78.659

94.253

0.741
  recA Latilactobacillus sakei subsp. sakei 23K

70.381

97.989

0.69
  recA Streptococcus pneumoniae R6

67.442

98.851

0.667
  recA Streptococcus pneumoniae TIGR4

67.442

98.851

0.667
  recA Streptococcus pneumoniae Rx1

67.442

98.851

0.667
  recA Streptococcus pneumoniae D39

67.442

98.851

0.667
  recA Streptococcus mitis NCTC 12261

69.091

94.828

0.655
  recA Streptococcus mitis SK321

68.788

94.828

0.652
  recA Streptococcus pyogenes NZ131

67.477

94.54

0.638
  recA Streptococcus mutans UA159

66.767

95.115

0.635
  recA Lactococcus lactis subsp. cremoris KW2

66.364

94.828

0.629
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.667

92.241

0.615
  recA Vibrio cholerae strain A1552

66.667

92.241

0.615
  recA Glaesserella parasuis strain SC1401

61.85

99.425

0.615
  recA Neisseria gonorrhoeae MS11

65.443

93.966

0.615
  recA Neisseria gonorrhoeae MS11

65.443

93.966

0.615
  recA Neisseria gonorrhoeae strain FA1090

65.443

93.966

0.615
  recA Ralstonia pseudosolanacearum GMI1000

64.742

94.54

0.612
  recA Pseudomonas stutzeri DSM 10701

62.242

97.414

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.905

96.552

0.598
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.286

92.529

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.997

93.966

0.592
  recA Acinetobacter baumannii D1279779

60

97.701

0.586
  recA Helicobacter pylori strain NCTC11637

63.354

92.529

0.586
  recA Helicobacter pylori 26695

63.043

92.529

0.583
  recA Acinetobacter baylyi ADP1

61.491

92.529

0.569