Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JDW18_RS22380 Genome accession   NZ_CP066783
Coordinates   4831011..4832135 (-) Length   374 a.a.
NCBI ID   WP_218241773.1    Uniprot ID   -
Organism   Comamonas fluminis strain CJ34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4826011..4837135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDW18_RS22360 yddG 4827380..4828321 (+) 942 WP_218241769.1 aromatic amino acid DMT transporter YddG -
  JDW18_RS22365 - 4828324..4829559 (+) 1236 WP_218241770.1 DUF4010 domain-containing protein -
  JDW18_RS22370 - 4829567..4830292 (-) 726 WP_218241771.1 hypothetical protein -
  JDW18_RS22375 recX 4830330..4830800 (-) 471 WP_218241772.1 recombination regulator RecX -
  JDW18_RS22380 recA 4831011..4832135 (-) 1125 WP_218241773.1 recombinase RecA Machinery gene
  JDW18_RS22385 - 4832274..4832765 (+) 492 WP_218241774.1 MarR family transcriptional regulator -
  JDW18_RS22390 - 4832857..4833531 (+) 675 WP_218241775.1 response regulator transcription factor -
  JDW18_RS22395 - 4833617..4835059 (+) 1443 WP_218241776.1 sensor histidine kinase -
  JDW18_RS22400 - 4835308..4836285 (+) 978 WP_218241777.1 tripartite tricarboxylate transporter substrate binding protein BugE -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 39556.26 Da        Isoelectric Point: 5.0954

>NTDB_id=522522 JDW18_RS22380 WP_218241773.1 4831011..4832135(-) (recA) [Comamonas fluminis strain CJ34]
MNATAKNTPADNSEKAKALAAALAQIEKQFGKGTIMKLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLTLQVIAEMQKQGGTCAFIDAEHALDTGYAQKLGVSLSDVLISQPDTGEQALEICDSLVRSGAVDLIVIDSVAALT
PKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGT
IKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLR
ENPALAFEIENKVRDSLGIALLPGAAGEEDAGKGKKGKKADKNGAVDEDGVIQA

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=522522 JDW18_RS22380 WP_218241773.1 4831011..4832135(-) (recA) [Comamonas fluminis strain CJ34]
ATGAACGCCACCGCCAAGAACACCCCCGCCGACAACAGCGAAAAAGCCAAAGCGCTGGCAGCAGCCCTGGCCCAGATCGA
AAAGCAGTTCGGCAAGGGCACCATCATGAAGCTGGGTGAGGGTGAAGCGATTGAAGACATTCAAGTCGTCTCCACCGGCT
CGCTGGGTCTGGACATCGCTCTGGGCGTAGGTGGTCTGCCCCGTGGCCGCGTGATCGAAATCTACGGCCCAGAATCCTCG
GGCAAGACCACGCTGACGTTGCAGGTTATTGCCGAGATGCAAAAGCAGGGCGGCACCTGCGCCTTTATCGATGCGGAACA
CGCGCTGGACACCGGCTACGCCCAGAAGCTGGGTGTGAGCCTCAGCGATGTGCTGATCAGCCAGCCTGACACCGGTGAGC
AGGCTCTGGAAATTTGCGACAGCCTGGTGCGCTCTGGCGCGGTGGACCTGATCGTTATTGACTCCGTGGCAGCCCTGACT
CCCAAGGCTGAAATTGAAGGCGAAATGGGCGATGCACTGCCCGGTCTGCAAGCCCGTCTGATGTCGCAAGCCCTGCGCAA
GCTGACTGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATTGGTGTGATGTTCG
GCTCGCCCGAAACCACCACTGGCGGTAACGCGCTGAAGTTCTACGCCTCTGTGCGTCTGGACATTCGCCGCACCGGCACG
ATCAAGAAGGGTGACGAAGCCATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGGTTTCGCCCCCCTTCAAAAC
CGCAGAATTCGACATTCTGTTCGGCGAAGGTATCAGCCGCGAAGGCGAAATTCTGGACATGGGCGTGAACGCCAAGATTC
TGGAAAAGTCCGGCGCCTGGTATGCCTACAACGGCGAAAAAATCGGCCAGGGCCGCGACAACTCGCGTGAATTCCTGCGT
GAAAACCCCGCGCTGGCTTTTGAGATCGAAAACAAGGTGCGTGACAGCCTGGGCATTGCCCTGCTGCCCGGCGCTGCTGG
TGAAGAAGATGCTGGCAAGGGCAAAAAAGGCAAGAAGGCCGACAAGAACGGTGCCGTTGACGAAGACGGCGTGATTCAGG
CCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.758

83.957

0.703
  recA Neisseria gonorrhoeae MS11

70.606

88.235

0.623
  recA Neisseria gonorrhoeae strain FA1090

70.606

88.235

0.623
  recA Neisseria gonorrhoeae MS11

70.606

88.235

0.623
  recA Pseudomonas stutzeri DSM 10701

71.166

87.166

0.62
  recA Acinetobacter baumannii D1279779

68.142

90.642

0.618
  recA Glaesserella parasuis strain SC1401

70.988

86.631

0.615
  recA Acinetobacter baylyi ADP1

69.632

87.166

0.607
  recA Vibrio cholerae strain A1552

69.325

87.166

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.325

87.166

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.826

91.979

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.567

89.572

0.596
  recA Helicobacter pylori strain NCTC11637

62.609

92.246

0.578
  recA Helicobacter pylori 26695

62.609

92.246

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

87.433

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

61.721

90.107

0.556
  recA Lactococcus lactis subsp. cremoris KW2

59.654

92.781

0.553
  recA Streptococcus mutans UA159

56.319

97.326

0.548
  recA Streptococcus pyogenes NZ131

61.094

87.968

0.537
  recA Streptococcus pneumoniae Rx1

60.121

88.503

0.532
  recA Streptococcus pneumoniae D39

60.121

88.503

0.532
  recA Streptococcus pneumoniae R6

60.121

88.503

0.532
  recA Streptococcus pneumoniae TIGR4

60.121

88.503

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.702

90.642

0.532
  recA Streptococcus mitis NCTC 12261

59.819

88.503

0.529
  recA Streptococcus mitis SK321

59.819

88.503

0.529