Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JGY88_RS08080 Genome accession   NZ_CP066721
Coordinates   1678819..1679868 (-) Length   349 a.a.
NCBI ID   WP_101104547.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain 2.1523     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1673819..1684868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY88_RS08065 (JGY88_08025) - 1675409..1676197 (-) 789 WP_107544431.1 TIGR00282 family metallophosphoesterase -
  JGY88_RS08070 (JGY88_08030) - 1676364..1676579 (+) 216 WP_101104545.1 hypothetical protein -
  JGY88_RS08075 (JGY88_08035) rny 1676778..1678337 (-) 1560 WP_101104546.1 ribonuclease Y -
  JGY88_RS08080 (JGY88_08040) recA 1678819..1679868 (-) 1050 WP_101104547.1 recombinase RecA Machinery gene
  JGY88_RS08085 (JGY88_08045) - 1680042..1681184 (-) 1143 WP_107544211.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  JGY88_RS08090 (JGY88_08050) pgsA 1681388..1681966 (-) 579 WP_042362816.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JGY88_RS08095 (JGY88_08055) - 1682018..1682410 (-) 393 WP_069795569.1 RodZ family helix-turn-helix domain-containing protein -
  JGY88_RS08100 (JGY88_08060) - 1682441..1683271 (-) 831 WP_101104549.1 YmfK family protein -
  JGY88_RS08105 (JGY88_08065) ymfI 1683457..1684161 (-) 705 WP_107538907.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37717.73 Da        Isoelectric Point: 5.1031

>NTDB_id=522146 JGY88_RS08080 WP_101104547.1 1678819..1679868(-) (recA) [Staphylococcus xylosus strain 2.1523]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNEARKVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQRNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVIDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKSYLKENPAVKAEIDR
KLREKLGIFDGDVEEPEAKNTATLLDEEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=522146 JGY88_RS08080 WP_101104547.1 1678819..1679868(-) (recA) [Staphylococcus xylosus strain 2.1523]
TTGGATAACGATCGTCAAAAGGCTTTAGATACAGTAATTAAAAATATGGAGAAATCATTTGGTAAAGGCGCGGTAATGAA
ATTGGGTGATAACGAGGCACGCAAAGTTTCAAGTGTTTCAAGTGGTTCTGTAACATTAGATAATGCTTTAGGAGTAGGTG
GTTACCCTAAGGGTAGAATCGTAGAAATTTATGGTCCAGAAAGTTCTGGTAAAACGACTGTGGCTCTTCATGCCATTGCG
GAAGTTCAAAGAAATGGAGGCGTGGCAGCTTTTATTGACGCTGAACACGCATTAGACCCAGTTTACGCAGAAGCATTGGG
TGTTGATATTCAAAATTTATATCTATCTCAACCTGACCATGGGGAACAAGGTTTAGAGATTGCAGAAGCGTTTGTTAGAA
GTGGAGCTGTAGACATAGTTGTTATTGATTCCGTCGCAGCATTAACGCCTAAAGCAGAAATCGAAGGTGAAATGGGAGAT
ACACACGTTGGTTTACAAGCGCGTTTGATGTCACAAGCCCTAAGAAAACTTTCAGGAGCGATATCTAAATCAAATACGAC
TGCTGTATTCATTAACCAAATTCGTGAGAAAGTCGGTGTTATGTTCGGTAATCCTGAAGTTACACCAGGTGGCCGTGCAC
TGAAATTCTACAGTTCTGTTCGTTTAGAAGTACGCCGTGCAGAACAATTAAAACAAGGACAAGATATTGTCGGTAATAGA
ACTAAAATTAAAGTTGTTAAGAATAAAGTGGCACCACCATTTAGAGTTGCTGAAGTCGATATTATGTACGGTAAAGGTAT
CTCTAAAGAGGGAGAATTGATCGATTTAGGTGTTGAAAATGAAATCGTTGATAAGTCAGGTGCTTGGTATTCTTATAATG
GCGACAGAATGGGACAAGGTAAAGAAAACGTAAAATCTTATCTTAAAGAAAACCCTGCTGTCAAAGCAGAAATAGATAGA
AAACTAAGAGAAAAATTAGGAATATTTGATGGAGATGTTGAAGAGCCAGAAGCTAAAAATACAGCGACACTTTTGGATGA
AGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.46

93.41

0.705
  recA Latilactobacillus sakei subsp. sakei 23K

71.037

93.983

0.668
  recA Streptococcus mutans UA159

62.857

100

0.63
  recA Streptococcus mitis SK321

64.412

97.421

0.628
  recA Streptococcus pyogenes NZ131

66.565

94.269

0.628
  recA Streptococcus pneumoniae D39

63.743

97.994

0.625
  recA Streptococcus pneumoniae Rx1

63.743

97.994

0.625
  recA Streptococcus pneumoniae R6

63.743

97.994

0.625
  recA Streptococcus pneumoniae TIGR4

63.743

97.994

0.625
  recA Lactococcus lactis subsp. cremoris KW2

65.861

94.842

0.625
  recA Streptococcus mitis NCTC 12261

62.536

99.427

0.622
  recA Neisseria gonorrhoeae strain FA1090

65.35

94.269

0.616
  recA Neisseria gonorrhoeae MS11

65.35

94.269

0.616
  recA Neisseria gonorrhoeae MS11

65.35

94.269

0.616
  recA Acinetobacter baylyi ADP1

65.031

93.41

0.607
  recA Helicobacter pylori 26695

64.329

93.983

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.83

94.269

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.417

93.41

0.602
  recA Vibrio cholerae strain A1552

64.417

93.41

0.602
  recA Helicobacter pylori strain NCTC11637

64.024

93.983

0.602
  recA Acinetobacter baumannii D1279779

64.11

93.41

0.599
  recA Ralstonia pseudosolanacearum GMI1000

65.495

89.685

0.587
  recA Pseudomonas stutzeri DSM 10701

61.656

93.41

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

95.129

0.573
  recA Glaesserella parasuis strain SC1401

60.87

92.264

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.188

91.404

0.55