Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JCP75_RS13470 Genome accession   NZ_CP066576
Coordinates   2747270..2748319 (-) Length   349 a.a.
NCBI ID   WP_002287328.1    Uniprot ID   A0AAV3GRG6
Organism   Enterococcus faecium strain Dallas 100_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2726502..2748319 2747270..2748319 within 0


Gene organization within MGE regions


Location: 2726502..2748319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCP75_RS13380 (JCP75_13380) - 2726502..2727695 (-) 1194 WP_017143963.1 site-specific integrase -
  JCP75_RS13385 (JCP75_13385) - 2727774..2727977 (-) 204 WP_002610247.1 excisionase -
  JCP75_RS13390 (JCP75_13390) - 2727977..2729137 (-) 1161 WP_008816501.1 replication initiation factor domain-containing protein -
  JCP75_RS13395 (JCP75_13395) - 2729533..2730204 (+) 672 WP_008393244.1 helix-turn-helix domain-containing protein -
  JCP75_RS13400 (JCP75_13400) - 2730574..2731188 (+) 615 WP_008393242.1 helix-turn-helix domain-containing protein -
  JCP75_RS13405 (JCP75_13405) - 2731421..2731765 (+) 345 Protein_2628 hypothetical protein -
  JCP75_RS13410 (JCP75_13410) thiT 2731846..2732415 (-) 570 WP_002287348.1 energy-coupled thiamine transporter ThiT -
  JCP75_RS13415 (JCP75_13415) - 2732589..2733560 (-) 972 WP_002287347.1 ribose-phosphate diphosphokinase -
  JCP75_RS13420 (JCP75_13420) glmU 2733654..2735027 (-) 1374 WP_002287346.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  JCP75_RS13425 (JCP75_13425) purR 2735530..2736348 (-) 819 WP_002287345.1 pur operon repressor -
  JCP75_RS13430 (JCP75_13430) - 2736515..2737339 (-) 825 WP_002287344.1 metal ABC transporter permease -
  JCP75_RS13435 (JCP75_13435) - 2737312..2737992 (-) 681 WP_002287343.1 metal ABC transporter ATP-binding protein -
  JCP75_RS13440 (JCP75_13440) - 2738015..2738953 (-) 939 WP_002287342.1 metal ABC transporter substrate-binding protein -
  JCP75_RS13445 (JCP75_13445) ispE 2739198..2740049 (-) 852 WP_002296028.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  JCP75_RS13450 (JCP75_13450) mprF 2740203..2742776 (-) 2574 WP_002287340.1 bifunctional lysylphosphatidylglycerol flippase/synthetase MprF -
  JCP75_RS13455 (JCP75_13455) proC 2742917..2743723 (+) 807 WP_002296027.1 pyrroline-5-carboxylate reductase -
  JCP75_RS13460 (JCP75_13460) - 2743915..2745216 (+) 1302 WP_002302440.1 ISL3 family transposase -
  JCP75_RS13465 (JCP75_13465) rny 2745303..2746859 (-) 1557 WP_002287336.1 ribonuclease Y -
  JCP75_RS13470 (JCP75_13470) recA 2747270..2748319 (-) 1050 WP_002287328.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37513.91 Da        Isoelectric Point: 4.8330

>NTDB_id=521116 JCP75_RS13470 WP_002287328.1 2747270..2748319(-) (recA) [Enterococcus faecium strain Dallas 100_1]
MADDRKAALDAALKKIEKSYGKGSIMKLGEKIDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKIYMANHPEMMAEVSA
LVRAAYGIGEEVAVPEDEKGQEELPLVEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=521116 JCP75_RS13470 WP_002287328.1 2747270..2748319(-) (recA) [Enterococcus faecium strain Dallas 100_1]
TTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCACTGAAAAAAATTGAAAAGAGCTATGGTAAAGGCTCTATTATGAA
ATTGGGCGAAAAAATCGACCAACAAATCTCTACAATTCCAAGTGGCTCTCTTGCGTTAGATGTCGCTTTAGGTGTCGGCG
GTTACCCCCGTGGACGTATCATCGAAGTATATGGACCTGAAAGTTCAGGTAAAACAACAGTTGCACTACACGCTATTGCA
GAAGTACAAAAAAATGGCGGAACGGCCGCTTTCATTGATGCTGAGCATGCGTTAGATCCGCAATATGCACAAAAATTAGG
TGTGAATATCGATGAACTACTTCTTTCACAGCCTGACACAGGAGAACAAGGTCTAGAGATCGCTGATGCTTTAGTATCAA
GTGGGGCTGTAGATATCGTAGTAGTCGATTCAGTTGCTGCTTTAGTTCCACGAGCAGAAATCGACGGCGAAATGGGTGAC
TCACATGTCGGGTTACAAGCACGTTTGATGTCTCAAGCATTGCGTAAACTCTCTGGTTCGATCAACAAAACAAAAACAAT
CGCTATTTTCATCAACCAAATCCGTGAAAAAGTAGGCGTGATGTTTGGGAATCCAGAAATCACTCCTGGAGGACGCGCAT
TGAAATTCTACGCAACGATCCGTTTGGAAGTACGTCGTGCAGAACAATTGAAACAAGGTACAGATATTGTTGGTAACCGT
ACAAAGATCAAAGTCGTAAAAAACAAAGTAGCACCTCCTTTCAAAATCGCTGAAGTAGATGTCATGTATGGTTTAGGGAT
CTCACAAGAAGGAGAACTTCTAGACATGGCAGTAGAAAAAGACATTGTTGATAAAAGCGGTGCTTGGTATTCTTATAAAG
AAGATCGGATTGGTCAAGGACGGGAAAACGCTAAAATCTATATGGCTAATCATCCTGAAATGATGGCAGAAGTTTCTGCT
CTAGTTAGAGCAGCTTATGGTATTGGTGAAGAAGTCGCTGTCCCAGAAGATGAAAAAGGACAAGAAGAATTGCCTTTAGT
AGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.386

99.427

0.779
  recA Bacillus subtilis subsp. subtilis str. 168

79.385

93.123

0.739
  recA Streptococcus pneumoniae R6

69.318

100

0.699
  recA Streptococcus pneumoniae TIGR4

69.318

100

0.699
  recA Streptococcus pneumoniae Rx1

69.318

100

0.699
  recA Streptococcus pneumoniae D39

69.318

100

0.699
  recA Streptococcus mitis SK321

71.131

96.275

0.685
  recA Streptococcus mitis NCTC 12261

70.833

96.275

0.682
  recA Streptococcus pyogenes NZ131

69.789

94.842

0.662
  recA Streptococcus mutans UA159

66.571

99.427

0.662
  recA Lactococcus lactis subsp. cremoris KW2

67.477

94.269

0.636
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

93.696

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.35

98.281

0.593
  recA Neisseria gonorrhoeae strain FA1090

62.614

94.269

0.59
  recA Neisseria gonorrhoeae MS11

62.614

94.269

0.59
  recA Neisseria gonorrhoeae MS11

62.614

94.269

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

93.123

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

92.55

0.57
  recA Acinetobacter baumannii D1279779

61.61

92.55

0.57
  recA Vibrio cholerae strain A1552

61.61

92.55

0.57
  recA Helicobacter pylori 26695

58.065

97.708

0.567
  recA Helicobacter pylori strain NCTC11637

58.065

97.708

0.567
  recA Acinetobacter baylyi ADP1

61.3

92.55

0.567
  recA Ralstonia pseudosolanacearum GMI1000

62.939

89.685

0.564
  recA Pseudomonas stutzeri DSM 10701

60.494

92.837

0.562
  recA Glaesserella parasuis strain SC1401

60.748

91.977

0.559