Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GI364_RS10990 Genome accession   NZ_CP066339
Coordinates   2426564..2427601 (+) Length   345 a.a.
NCBI ID   WP_198853602.1    Uniprot ID   A0A7T5EY06
Organism   Alicyclobacillus sp. SO9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2421564..2432601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GI364_RS10970 (GI364_11085) - 2421915..2422406 (+) 492 WP_198853598.1 YajQ family cyclic di-GMP-binding protein -
  GI364_RS10975 (GI364_11090) pgsA 2422597..2423175 (+) 579 WP_198853599.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GI364_RS10980 (GI364_11095) - 2423183..2424442 (+) 1260 WP_198853600.1 competence/damage-inducible protein A -
  GI364_RS10985 (GI364_11100) - 2424660..2426237 (+) 1578 WP_198853601.1 DEAD/DEAH box helicase -
  GI364_RS10990 (GI364_11105) recA 2426564..2427601 (+) 1038 WP_198853602.1 recombinase RecA Machinery gene
  GI364_RS10995 (GI364_11110) - 2427591..2428253 (+) 663 WP_198853603.1 regulatory protein RecX -
  GI364_RS11000 (GI364_11115) rny 2428385..2429932 (+) 1548 WP_198853604.1 ribonuclease Y -
  GI364_RS11005 (GI364_11120) - 2430022..2430777 (+) 756 WP_370541859.1 TIGR00282 family metallophosphoesterase -
  GI364_RS11010 (GI364_11125) - 2430877..2431137 (+) 261 WP_198853605.1 stage V sporulation protein S -
  GI364_RS11015 (GI364_11130) - 2431220..2432173 (+) 954 WP_233096109.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37321.66 Da        Isoelectric Point: 5.7189

>NTDB_id=519369 GI364_RS10990 WP_198853602.1 2426564..2427601(+) (recA) [Alicyclobacillus sp. SO9]
MNDKRAALDMALKQIEKQFGKGSVMKLGEASATMNVATISTGSLALDIALGVGGLPRGRIIEIYGPESSGKTTVALHAVA
EAQRRGGQAAFIDAEHALDPVYARHLGVDIDELLISQPDTGEQALEIAEALVRSGAVDVIVIDSVAALVPKSELEGEMGD
SHVGLQARLMSQALRKLAGAISKSKTIAVFINQIREKVGVMFGNPETTTGGRALKFYSTIRLEVRRAEALKQGTDIVGSR
MRIKVVKNKVAPPFKQVEVDLMFGEGISRQGSIIDIGTDLDIVQKSGAWYSFKEERLGQGRENAKQFLKEHPEYADEIED
LIRAHHDLPVSNPVKESEEVKDVES

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=519369 GI364_RS10990 WP_198853602.1 2426564..2427601(+) (recA) [Alicyclobacillus sp. SO9]
ATGAACGATAAACGCGCGGCCTTAGATATGGCGCTGAAACAGATTGAGAAACAGTTTGGCAAGGGCTCTGTGATGAAGCT
GGGAGAAGCTTCTGCAACCATGAATGTTGCAACGATTTCGACGGGGTCCTTGGCCTTGGATATAGCTTTAGGTGTGGGAG
GGCTACCCCGAGGTCGTATCATTGAGATTTACGGACCAGAGTCGTCAGGAAAGACGACCGTGGCACTGCATGCTGTCGCA
GAAGCTCAGCGACGCGGAGGTCAGGCCGCTTTTATTGACGCGGAGCACGCACTCGACCCGGTCTATGCTCGCCACCTAGG
TGTAGACATTGATGAGTTGCTCATTTCGCAGCCGGATACCGGAGAGCAGGCGTTGGAGATTGCTGAAGCTCTGGTGCGCA
GCGGTGCAGTTGACGTTATAGTCATTGATTCGGTTGCAGCCCTGGTTCCGAAGAGCGAACTGGAAGGGGAAATGGGTGAT
TCCCATGTTGGCTTACAGGCACGCTTGATGTCACAGGCTTTGCGTAAGTTAGCGGGAGCCATCAGCAAGTCTAAAACAAT
CGCTGTGTTTATTAATCAGATTCGTGAGAAAGTAGGCGTGATGTTCGGGAATCCTGAGACAACTACAGGTGGACGAGCAC
TGAAGTTTTATTCGACGATTCGACTTGAGGTCCGGCGTGCGGAGGCGTTAAAACAGGGTACGGACATCGTGGGAAGCCGG
ATGAGAATAAAAGTAGTAAAAAATAAGGTGGCTCCTCCGTTCAAACAGGTTGAAGTAGACCTGATGTTTGGCGAAGGCAT
TTCGCGGCAGGGCAGCATTATTGATATTGGCACAGACCTGGACATTGTACAAAAGAGCGGTGCGTGGTATTCCTTCAAGG
AGGAGCGCTTGGGGCAGGGACGGGAAAACGCCAAGCAGTTCCTGAAAGAACACCCTGAGTATGCAGATGAAATCGAGGAC
TTGATTAGGGCTCATCACGACTTACCTGTTTCGAACCCTGTGAAAGAGAGCGAAGAAGTGAAAGACGTTGAATCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T5EY06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.744

95.072

0.739
  recA Latilactobacillus sakei subsp. sakei 23K

68.314

99.71

0.681
  recA Streptococcus mitis SK321

63.324

100

0.641
  recA Streptococcus pneumoniae Rx1

66.061

95.652

0.632
  recA Streptococcus pneumoniae D39

66.061

95.652

0.632
  recA Streptococcus pneumoniae R6

66.061

95.652

0.632
  recA Streptococcus pneumoniae TIGR4

66.061

95.652

0.632
  recA Streptococcus mitis NCTC 12261

63.93

98.841

0.632
  recA Streptococcus mutans UA159

62.356

100

0.629
  recA Streptococcus pyogenes NZ131

66.258

94.493

0.626
  recA Lactococcus lactis subsp. cremoris KW2

65.031

94.493

0.614
  recA Pseudomonas stutzeri DSM 10701

62.13

97.971

0.609
  recA Neisseria gonorrhoeae strain FA1090

64.706

93.623

0.606
  recA Neisseria gonorrhoeae MS11

64.706

93.623

0.606
  recA Neisseria gonorrhoeae MS11

64.706

93.623

0.606
  recA Ralstonia pseudosolanacearum GMI1000

63.11

95.072

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.486

93.043

0.6
  recA Vibrio cholerae strain A1552

64.486

93.043

0.6
  recA Glaesserella parasuis strain SC1401

62.727

95.652

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.467

93.623

0.594
  recA Acinetobacter baumannii D1279779

62.305

93.043

0.58
  recA Helicobacter pylori strain NCTC11637

62.776

91.884

0.577
  recA Helicobacter pylori 26695

62.461

91.884

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

93.623

0.574
  recA Acinetobacter baylyi ADP1

61.18

93.333

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.021

94.783

0.559